miRNA display CGI


Results 21 - 40 of 266 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25532 5' -60.1 NC_005337.1 + 52071 0.66 0.67095
Target:  5'- gGCucuuCGACcgcCGGCCGuGCGCGCCc-- -3'
miRNA:   3'- aCGu---GCUGua-GUCGGC-CGCGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 131081 0.66 0.67095
Target:  5'- aGCGCGAguUCguGGUCuGCGCGCUGg- -3'
miRNA:   3'- aCGUGCUguAG--UCGGcCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 80673 0.66 0.690904
Target:  5'- cUGCGCGGCGcgCuuCCGcGCGCGCaUGUGc -3'
miRNA:   3'- -ACGUGCUGUa-GucGGC-CGCGCG-GCAC- -5'
25532 5' -60.1 NC_005337.1 + 122212 0.66 0.720457
Target:  5'- gGCGCgGACGU--GUCGGCGCGCaCGc- -3'
miRNA:   3'- aCGUG-CUGUAguCGGCCGCGCG-GCac -5'
25532 5' -60.1 NC_005337.1 + 95334 0.66 0.710667
Target:  5'- gUGCGCGucGCAguagcGCCGGaGCGCCGa- -3'
miRNA:   3'- -ACGUGC--UGUagu--CGGCCgCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 38835 0.66 0.720457
Target:  5'- cGCugGACGcgUAcGCCGGCcuguGCGCCa-- -3'
miRNA:   3'- aCGugCUGUa-GU-CGGCCG----CGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 128250 0.66 0.67095
Target:  5'- cGCACGGCccu-GCUGGCGCccGCCcgGUGa -3'
miRNA:   3'- aCGUGCUGuaguCGGCCGCG--CGG--CAC- -5'
25532 5' -60.1 NC_005337.1 + 43829 0.66 0.710667
Target:  5'- -cCACGcuGCAgcgGGCCGGCGgCGCgGUGg -3'
miRNA:   3'- acGUGC--UGUag-UCGGCCGC-GCGgCAC- -5'
25532 5' -60.1 NC_005337.1 + 63122 0.66 0.720457
Target:  5'- aGCgACGACAUCuGCCaacaGGUGCaguuGCCGg- -3'
miRNA:   3'- aCG-UGCUGUAGuCGG----CCGCG----CGGCac -5'
25532 5' -60.1 NC_005337.1 + 11375 0.66 0.67095
Target:  5'- aGCGCGcucgcCAUCGGCgGGCugauGCGCCa-- -3'
miRNA:   3'- aCGUGCu----GUAGUCGgCCG----CGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 91198 0.66 0.710667
Target:  5'- cGcCGCGAUG-CGGaCgGGCGCGCCGc- -3'
miRNA:   3'- aC-GUGCUGUaGUC-GgCCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 70334 0.66 0.67095
Target:  5'- cGCACGAagaCGGCguuccgcacggCGGUGCGCCGc- -3'
miRNA:   3'- aCGUGCUguaGUCG-----------GCCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 56443 0.66 0.67095
Target:  5'- aGCGCGugGaCGGCgCGGUG-GCCGa- -3'
miRNA:   3'- aCGUGCugUaGUCG-GCCGCgCGGCac -5'
25532 5' -60.1 NC_005337.1 + 77653 0.66 0.700813
Target:  5'- aGCGCGuCGUagacgCGGCCGGCGaagGCCa-- -3'
miRNA:   3'- aCGUGCuGUA-----GUCGGCCGCg--CGGcac -5'
25532 5' -60.1 NC_005337.1 + 68129 0.66 0.700813
Target:  5'- cGCGgGGCcggUGGCCGcGCGCGCCc-- -3'
miRNA:   3'- aCGUgCUGua-GUCGGC-CGCGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 23064 0.66 0.698836
Target:  5'- cGCGCGccggaacGCggCGGCCGugcccggcaucguGCGCGCgGUGg -3'
miRNA:   3'- aCGUGC-------UGuaGUCGGC-------------CGCGCGgCAC- -5'
25532 5' -60.1 NC_005337.1 + 58705 0.66 0.720457
Target:  5'- cGCGucauCGcCGUCGGCagguagaugGGCGCGCCGg- -3'
miRNA:   3'- aCGU----GCuGUAGUCGg--------CCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 84900 0.66 0.669949
Target:  5'- aGCACGAgGUCgaacaguAGCCGccgcaCGCGCCGc- -3'
miRNA:   3'- aCGUGCUgUAG-------UCGGCc----GCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 85627 0.66 0.67095
Target:  5'- -uCACGGCGUcCAGCU-GCGCGCUGg- -3'
miRNA:   3'- acGUGCUGUA-GUCGGcCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 36551 0.66 0.720457
Target:  5'- gGCugGGCGgc-GCCGGCGaGCCa-- -3'
miRNA:   3'- aCGugCUGUaguCGGCCGCgCGGcac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.