miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25532 5' -60.1 NC_005337.1 + 95943 0.66 0.67095
Target:  5'- aGCGCGuAC-UCGcccggcGCCGGCGUGUCGa- -3'
miRNA:   3'- aCGUGC-UGuAGU------CGGCCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 23064 0.66 0.698836
Target:  5'- cGCGCGccggaacGCggCGGCCGugcccggcaucguGCGCGCgGUGg -3'
miRNA:   3'- aCGUGC-------UGuaGUCGGC-------------CGCGCGgCAC- -5'
25532 5' -60.1 NC_005337.1 + 42735 0.66 0.67095
Target:  5'- gGcCACGGCcgC-GCCGaGCGUGCgGUGc -3'
miRNA:   3'- aC-GUGCUGuaGuCGGC-CGCGCGgCAC- -5'
25532 5' -60.1 NC_005337.1 + 69586 0.66 0.67095
Target:  5'- cUGCGCGACGaggaggacugcUCGGUCGuGCGCaucuucGCCGa- -3'
miRNA:   3'- -ACGUGCUGU-----------AGUCGGC-CGCG------CGGCac -5'
25532 5' -60.1 NC_005337.1 + 69969 0.66 0.680946
Target:  5'- gGCACGcGCAagAcGCCGGaCGCgaccGCCGUGc -3'
miRNA:   3'- aCGUGC-UGUagU-CGGCC-GCG----CGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 123929 0.66 0.687921
Target:  5'- gGCgugACGACGUUccccacgccccgcgAGCCGGuCGCGCUGc- -3'
miRNA:   3'- aCG---UGCUGUAG--------------UCGGCC-GCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 75816 0.66 0.67095
Target:  5'- aGCGaGACGUCGGCggaggucaugCGGU-CGCCGUGa -3'
miRNA:   3'- aCGUgCUGUAGUCG----------GCCGcGCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 80673 0.66 0.690904
Target:  5'- cUGCGCGGCGcgCuuCCGcGCGCGCaUGUGc -3'
miRNA:   3'- -ACGUGCUGUa-GucGGC-CGCGCG-GCAC- -5'
25532 5' -60.1 NC_005337.1 + 32046 0.66 0.700813
Target:  5'- cUGCACGcgcCA-CAGCCGG-GCGUaCGUGu -3'
miRNA:   3'- -ACGUGCu--GUaGUCGGCCgCGCG-GCAC- -5'
25532 5' -60.1 NC_005337.1 + 132081 0.66 0.690904
Target:  5'- cGCGCccGCGUCcGCCGcCuGCGCCGUGc -3'
miRNA:   3'- aCGUGc-UGUAGuCGGCcG-CGCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 38835 0.66 0.720457
Target:  5'- cGCugGACGcgUAcGCCGGCcuguGCGCCa-- -3'
miRNA:   3'- aCGugCUGUa-GU-CGGCCG----CGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 56443 0.66 0.67095
Target:  5'- aGCGCGugGaCGGCgCGGUG-GCCGa- -3'
miRNA:   3'- aCGUGCugUaGUCG-GCCGCgCGGCac -5'
25532 5' -60.1 NC_005337.1 + 77653 0.66 0.700813
Target:  5'- aGCGCGuCGUagacgCGGCCGGCGaagGCCa-- -3'
miRNA:   3'- aCGUGCuGUA-----GUCGGCCGCg--CGGcac -5'
25532 5' -60.1 NC_005337.1 + 40038 0.66 0.680946
Target:  5'- aGCG-GGCGUCGuCgCGGUGCGCCGa- -3'
miRNA:   3'- aCGUgCUGUAGUcG-GCCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 124517 0.66 0.679948
Target:  5'- cGCGacgauacCGACAUCGacGCCaGCGCcGUCGUGa -3'
miRNA:   3'- aCGU-------GCUGUAGU--CGGcCGCG-CGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 52071 0.66 0.67095
Target:  5'- gGCucuuCGACcgcCGGCCGuGCGCGCCc-- -3'
miRNA:   3'- aCGu---GCUGua-GUCGGC-CGCGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 94846 0.66 0.690904
Target:  5'- aGCGCGGCccgAGCgGGCGCccGCgCGUGu -3'
miRNA:   3'- aCGUGCUGuagUCGgCCGCG--CG-GCAC- -5'
25532 5' -60.1 NC_005337.1 + 131081 0.66 0.67095
Target:  5'- aGCGCGAguUCguGGUCuGCGCGCUGg- -3'
miRNA:   3'- aCGUGCUguAG--UCGGcCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 133709 0.66 0.669949
Target:  5'- cGCGCGGCcgCGGCguacgcgCGGCgguggcggagugGCGCCGg- -3'
miRNA:   3'- aCGUGCUGuaGUCG-------GCCG------------CGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 132487 0.66 0.690904
Target:  5'- gUGCgGCGGCAggagggacuggCGGCCGGCGggaUGCCGc- -3'
miRNA:   3'- -ACG-UGCUGUa----------GUCGGCCGC---GCGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.