miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25532 5' -60.1 NC_005337.1 + 117514 1.08 0.001152
Target:  5'- gUGCACGACAUCAGCCGGCGCGCCGUGa -3'
miRNA:   3'- -ACGUGCUGUAGUCGGCCGCGCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 99651 0.79 0.122813
Target:  5'- gUGCGCGGCAUCgccgcgcGGCUgGGCGCGcCCGUGg -3'
miRNA:   3'- -ACGUGCUGUAG-------UCGG-CCGCGC-GGCAC- -5'
25532 5' -60.1 NC_005337.1 + 36798 0.78 0.150889
Target:  5'- cGCugGGCGUCAGCC-GCGuCGCCGg- -3'
miRNA:   3'- aCGugCUGUAGUCGGcCGC-GCGGCac -5'
25532 5' -60.1 NC_005337.1 + 40525 0.78 0.154734
Target:  5'- gGUGCGGCAUgCAGCCgccgcGGCGCGCgGUGg -3'
miRNA:   3'- aCGUGCUGUA-GUCGG-----CCGCGCGgCAC- -5'
25532 5' -60.1 NC_005337.1 + 105607 0.78 0.158669
Target:  5'- cGC-CGAgGUCggGGCCGGCGUGCCGUu -3'
miRNA:   3'- aCGuGCUgUAG--UCGGCCGCGCGGCAc -5'
25532 5' -60.1 NC_005337.1 + 88242 0.77 0.171019
Target:  5'- cUGCgaaGACGUCGugcguGCCGGCGCGCCGg- -3'
miRNA:   3'- -ACGug-CUGUAGU-----CGGCCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 118765 0.77 0.179723
Target:  5'- cUGCGCGACGUCcuagaugacGCCGGCggcgGCGCCGUc -3'
miRNA:   3'- -ACGUGCUGUAGu--------CGGCCG----CGCGGCAc -5'
25532 5' -60.1 NC_005337.1 + 76973 0.76 0.216984
Target:  5'- cGCGCGguuccgagagcggcGCcgCAGCCGcGCGCGCCGg- -3'
miRNA:   3'- aCGUGC--------------UGuaGUCGGC-CGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 46013 0.76 0.218562
Target:  5'- -cCGCGGCGcCcGCCGGCGCGCCGg- -3'
miRNA:   3'- acGUGCUGUaGuCGGCCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 98758 0.76 0.218562
Target:  5'- cUGCACcuCGUCA-CCGGCaGCGCCGUGg -3'
miRNA:   3'- -ACGUGcuGUAGUcGGCCG-CGCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 55721 0.76 0.218562
Target:  5'- aGCACGACG-C-GCaCGGCGCGcCCGUGu -3'
miRNA:   3'- aCGUGCUGUaGuCG-GCCGCGC-GGCAC- -5'
25532 5' -60.1 NC_005337.1 + 6974 0.75 0.229332
Target:  5'- aGCACGGC--CAGCgGGUGaCGCCGUGc -3'
miRNA:   3'- aCGUGCUGuaGUCGgCCGC-GCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 95911 0.74 0.258226
Target:  5'- cGCgGCGACggCGGCCGcGCGCGCCu-- -3'
miRNA:   3'- aCG-UGCUGuaGUCGGC-CGCGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 99524 0.74 0.258226
Target:  5'- cUGCgACGACG-CGGcCCGGUGCGCCGc- -3'
miRNA:   3'- -ACG-UGCUGUaGUC-GGCCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 127001 0.74 0.276951
Target:  5'- aGCACGACuacgucCAGCU-GCGCGUCGUGg -3'
miRNA:   3'- aCGUGCUGua----GUCGGcCGCGCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 95322 0.74 0.283429
Target:  5'- uUGCGCucguCGUCGGUUaGCGCGCCGUGg -3'
miRNA:   3'- -ACGUGcu--GUAGUCGGcCGCGCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 9752 0.74 0.283429
Target:  5'- aGCGCG-CGUCGGCCGGCGCcggGuuGg- -3'
miRNA:   3'- aCGUGCuGUAGUCGGCCGCG---CggCac -5'
25532 5' -60.1 NC_005337.1 + 79415 0.74 0.290027
Target:  5'- gGCGCGGCAUCucgaugaacGCCGG-GCGCgCGUGc -3'
miRNA:   3'- aCGUGCUGUAGu--------CGGCCgCGCG-GCAC- -5'
25532 5' -60.1 NC_005337.1 + 33577 0.73 0.296067
Target:  5'- aGCGCGGCgccgcgucgcGUCGGCCGcGCGCGCggcgcgaacgcggCGUGg -3'
miRNA:   3'- aCGUGCUG----------UAGUCGGC-CGCGCG-------------GCAC- -5'
25532 5' -60.1 NC_005337.1 + 128703 0.73 0.296744
Target:  5'- cGCugGCGACG-CGGCUGGCGCG-CGUGu -3'
miRNA:   3'- aCG--UGCUGUaGUCGGCCGCGCgGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.