miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25532 5' -60.1 NC_005337.1 + 568 0.66 0.720457
Target:  5'- cGCGCGuacGCcgCGGCCGcGCGgaagcCGCCGg- -3'
miRNA:   3'- aCGUGC---UGuaGUCGGC-CGC-----GCGGCac -5'
25532 5' -60.1 NC_005337.1 + 568 0.66 0.720457
Target:  5'- cGCGCGuacGCcgCGGCCGcGCGgaagcCGCCGg- -3'
miRNA:   3'- aCGUGC---UGuaGUCGGC-CGC-----GCGGCac -5'
25532 5' -60.1 NC_005337.1 + 865 0.69 0.492919
Target:  5'- aGCGCgGGCG-CGGCCGggcggaagaGCGCGCCGa- -3'
miRNA:   3'- aCGUG-CUGUaGUCGGC---------CGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 865 0.69 0.492919
Target:  5'- aGCGCgGGCG-CGGCCGggcggaagaGCGCGCCGa- -3'
miRNA:   3'- aCGUG-CUGUaGUCGGC---------CGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 1079 0.69 0.521553
Target:  5'- cUGCGgGACGgagcgggcuaCAGCCGGCgcaGCGCCGc- -3'
miRNA:   3'- -ACGUgCUGUa---------GUCGGCCG---CGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 1079 0.69 0.521553
Target:  5'- cUGCGgGACGgagcgggcuaCAGCCGGCgcaGCGCCGc- -3'
miRNA:   3'- -ACGUgCUGUa---------GUCGGCCG---CGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 1139 0.67 0.629734
Target:  5'- cGCGCGAC--CAGCUccgcgggGaGCGCGCCGg- -3'
miRNA:   3'- aCGUGCUGuaGUCGG-------C-CGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 1770 0.69 0.531243
Target:  5'- aGgGCGGCAUCccGCCGGC-CGCCa-- -3'
miRNA:   3'- aCgUGCUGUAGu-CGGCCGcGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 2086 0.69 0.540997
Target:  5'- cGCACGGUGUCGGC--GCGCGCCGc- -3'
miRNA:   3'- aCGUGCUGUAGUCGgcCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 2188 0.66 0.680946
Target:  5'- cGCACGGCG-CAGgCGGCGgaCGCgGg- -3'
miRNA:   3'- aCGUGCUGUaGUCgGCCGC--GCGgCac -5'
25532 5' -60.1 NC_005337.1 + 2600 0.7 0.44332
Target:  5'- cGCGCGAagucgaagucguUCAGCgCGGCGCGCaCGg- -3'
miRNA:   3'- aCGUGCUgu----------AGUCG-GCCGCGCG-GCac -5'
25532 5' -60.1 NC_005337.1 + 2922 0.67 0.660924
Target:  5'- --aGCGGCGUC-GCCGGaGUGCCGa- -3'
miRNA:   3'- acgUGCUGUAGuCGGCCgCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 3117 0.67 0.610611
Target:  5'- -cCGCGACcgCGGCCGGCcucgcguccagcGCGCgGUc -3'
miRNA:   3'- acGUGCUGuaGUCGGCCG------------CGCGgCAc -5'
25532 5' -60.1 NC_005337.1 + 4044 0.67 0.630741
Target:  5'- gUGCAgCGGCGUCuuGUCGaGCGgGcCCGUGu -3'
miRNA:   3'- -ACGU-GCUGUAGu-CGGC-CGCgC-GGCAC- -5'
25532 5' -60.1 NC_005337.1 + 5037 0.67 0.650874
Target:  5'- aGCACGuACAgaugCAGCgGGguCGCGCCa-- -3'
miRNA:   3'- aCGUGC-UGUa---GUCGgCC--GCGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 5755 0.67 0.650874
Target:  5'- gGCACGGCGgcgggcggCAGCCG-CGCGaccaCGUa -3'
miRNA:   3'- aCGUGCUGUa-------GUCGGCcGCGCg---GCAc -5'
25532 5' -60.1 NC_005337.1 + 5974 0.69 0.502387
Target:  5'- cGCGCGAgCAgacgGGCCaGGCGCGCgCGUu -3'
miRNA:   3'- aCGUGCU-GUag--UCGG-CCGCGCG-GCAc -5'
25532 5' -60.1 NC_005337.1 + 6682 0.67 0.610611
Target:  5'- aGCACGAC-UCGGCgacguccaCGGCuGCGCCc-- -3'
miRNA:   3'- aCGUGCUGuAGUCG--------GCCG-CGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 6906 0.67 0.640811
Target:  5'- cGCGCGG-GUCcgcGCCGGCGCGCa--- -3'
miRNA:   3'- aCGUGCUgUAGu--CGGCCGCGCGgcac -5'
25532 5' -60.1 NC_005337.1 + 6974 0.75 0.229332
Target:  5'- aGCACGGC--CAGCgGGUGaCGCCGUGc -3'
miRNA:   3'- aCGUGCUGuaGUCGgCCGC-GCGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.