miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25532 5' -60.1 NC_005337.1 + 103134 0.71 0.411859
Target:  5'- aGCGCGACAUCAGCUacuucgagaccgGGUucGCGgucaCCGUGg -3'
miRNA:   3'- aCGUGCUGUAGUCGG------------CCG--CGC----GGCAC- -5'
25532 5' -60.1 NC_005337.1 + 40227 0.72 0.339579
Target:  5'- aGCGCGGagaaguCGUCGGCCGcGcCGCGCCGc- -3'
miRNA:   3'- aCGUGCU------GUAGUCGGC-C-GCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 48317 0.72 0.354047
Target:  5'- gUGCGCGggcgcgcugacggGCAUgAGCCGG-GCGCCGg- -3'
miRNA:   3'- -ACGUGC-------------UGUAgUCGGCCgCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 81790 0.72 0.35482
Target:  5'- gGCGCG-CAUgAGCCGGCucucgcggGCGCCGc- -3'
miRNA:   3'- aCGUGCuGUAgUCGGCCG--------CGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 29526 0.72 0.362619
Target:  5'- aGCACGGCgGUCuucGCgCGGCG-GCCGUGc -3'
miRNA:   3'- aCGUGCUG-UAGu--CG-GCCGCgCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 99584 0.72 0.362619
Target:  5'- cGUGCGGCGcuUCGGgCGGgacUGCGCCGUGa -3'
miRNA:   3'- aCGUGCUGU--AGUCgGCC---GCGCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 68950 0.72 0.378572
Target:  5'- cGCGCGGCggCA-CCGGCGUGCCc-- -3'
miRNA:   3'- aCGUGCUGuaGUcGGCCGCGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 78554 0.71 0.390016
Target:  5'- gGCACGuACAgCAGCgGGUugugggccuccauggGCGCCGUGu -3'
miRNA:   3'- aCGUGC-UGUaGUCGgCCG---------------CGCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 45058 0.71 0.394989
Target:  5'- aGCugGGCGcCGGCCGGCcggagauccGUGCCGa- -3'
miRNA:   3'- aCGugCUGUaGUCGGCCG---------CGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 128703 0.73 0.296744
Target:  5'- cGCugGCGACG-CGGCUGGCGCG-CGUGu -3'
miRNA:   3'- aCG--UGCUGUaGUCGGCCGCGCgGCAC- -5'
25532 5' -60.1 NC_005337.1 + 79415 0.74 0.290027
Target:  5'- gGCGCGGCAUCucgaugaacGCCGG-GCGCgCGUGc -3'
miRNA:   3'- aCGUGCUGUAGu--------CGGCCgCGCG-GCAC- -5'
25532 5' -60.1 NC_005337.1 + 9752 0.74 0.283429
Target:  5'- aGCGCG-CGUCGGCCGGCGCcggGuuGg- -3'
miRNA:   3'- aCGUGCuGUAGUCGGCCGCG---CggCac -5'
25532 5' -60.1 NC_005337.1 + 36798 0.78 0.150889
Target:  5'- cGCugGGCGUCAGCC-GCGuCGCCGg- -3'
miRNA:   3'- aCGugCUGUAGUCGGcCGC-GCGGCac -5'
25532 5' -60.1 NC_005337.1 + 40525 0.78 0.154734
Target:  5'- gGUGCGGCAUgCAGCCgccgcGGCGCGCgGUGg -3'
miRNA:   3'- aCGUGCUGUA-GUCGG-----CCGCGCGgCAC- -5'
25532 5' -60.1 NC_005337.1 + 76973 0.76 0.216984
Target:  5'- cGCGCGguuccgagagcggcGCcgCAGCCGcGCGCGCCGg- -3'
miRNA:   3'- aCGUGC--------------UGuaGUCGGC-CGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 55721 0.76 0.218562
Target:  5'- aGCACGACG-C-GCaCGGCGCGcCCGUGu -3'
miRNA:   3'- aCGUGCUGUaGuCG-GCCGCGC-GGCAC- -5'
25532 5' -60.1 NC_005337.1 + 98758 0.76 0.218562
Target:  5'- cUGCACcuCGUCA-CCGGCaGCGCCGUGg -3'
miRNA:   3'- -ACGUGcuGUAGUcGGCCG-CGCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 46013 0.76 0.218562
Target:  5'- -cCGCGGCGcCcGCCGGCGCGCCGg- -3'
miRNA:   3'- acGUGCUGUaGuCGGCCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 6974 0.75 0.229332
Target:  5'- aGCACGGC--CAGCgGGUGaCGCCGUGc -3'
miRNA:   3'- aCGUGCUGuaGUCGgCCGC-GCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 99524 0.74 0.258226
Target:  5'- cUGCgACGACG-CGGcCCGGUGCGCCGc- -3'
miRNA:   3'- -ACG-UGCUGUaGUC-GGCCGCGCGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.