miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25532 5' -60.1 NC_005337.1 + 7483 0.68 0.570593
Target:  5'- cGCACGACGUCcaGGUccaCGGgGCuGCCGg- -3'
miRNA:   3'- aCGUGCUGUAG--UCG---GCCgCG-CGGCac -5'
25532 5' -60.1 NC_005337.1 + 7857 0.67 0.65992
Target:  5'- cGCGCGcCGUCGcgcGCCGG-GCggccuugGCCGUGa -3'
miRNA:   3'- aCGUGCuGUAGU---CGGCCgCG-------CGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 8149 0.69 0.492919
Target:  5'- gGCAUGGCcgCGcGCaCGGCGUGCgCGUa -3'
miRNA:   3'- aCGUGCUGuaGU-CG-GCCGCGCG-GCAc -5'
25532 5' -60.1 NC_005337.1 + 9318 0.68 0.600566
Target:  5'- cGCACgGACGaCAGCCGaGCuGCGuCCGg- -3'
miRNA:   3'- aCGUG-CUGUaGUCGGC-CG-CGC-GGCac -5'
25532 5' -60.1 NC_005337.1 + 9752 0.74 0.283429
Target:  5'- aGCGCG-CGUCGGCCGGCGCcggGuuGg- -3'
miRNA:   3'- aCGUGCuGUAGUCGGCCGCG---CggCac -5'
25532 5' -60.1 NC_005337.1 + 11375 0.66 0.67095
Target:  5'- aGCGCGcucgcCAUCGGCgGGCugauGCGCCa-- -3'
miRNA:   3'- aCGUGCu----GUAGUCGgCCG----CGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 11521 0.69 0.540997
Target:  5'- aGUACucCAcgCGGUCGGCGUGCCGg- -3'
miRNA:   3'- aCGUGcuGUa-GUCGGCCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 11830 0.7 0.437982
Target:  5'- cUGCGCGAUga-AGUCGGCGUGCaUGUGc -3'
miRNA:   3'- -ACGUGCUGuagUCGGCCGCGCG-GCAC- -5'
25532 5' -60.1 NC_005337.1 + 12048 0.66 0.700813
Target:  5'- cGUGCGGuCGUCcGgCGuGCGCGCCGa- -3'
miRNA:   3'- aCGUGCU-GUAGuCgGC-CGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 12443 0.66 0.720457
Target:  5'- -uCACGAgcaCGUCGGCCGGCGUcauaCCGa- -3'
miRNA:   3'- acGUGCU---GUAGUCGGCCGCGc---GGCac -5'
25532 5' -60.1 NC_005337.1 + 12904 0.66 0.710667
Target:  5'- uUGUGCGGCAUCuucuuCCcGUGCGCCGa- -3'
miRNA:   3'- -ACGUGCUGUAGuc---GGcCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 13689 0.67 0.630741
Target:  5'- aGCGCGAgG-CAGacuaGGUGCGCgGUGg -3'
miRNA:   3'- aCGUGCUgUaGUCgg--CCGCGCGgCAC- -5'
25532 5' -60.1 NC_005337.1 + 13901 0.73 0.324818
Target:  5'- cGCACGAgc-CGGCaGGCGCGCCGg- -3'
miRNA:   3'- aCGUGCUguaGUCGgCCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 14423 0.68 0.600566
Target:  5'- cGCGCGACGUgCcGCCGcugGCGCCGg- -3'
miRNA:   3'- aCGUGCUGUA-GuCGGCcg-CGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 15703 0.69 0.502387
Target:  5'- aGCACGACGU--GCCGGa-CGUCGUGc -3'
miRNA:   3'- aCGUGCUGUAguCGGCCgcGCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 16061 0.67 0.650874
Target:  5'- cUGCAUgauGACGUCGGgCGGCuccGCGCCc-- -3'
miRNA:   3'- -ACGUG---CUGUAGUCgGCCG---CGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 16750 0.67 0.630741
Target:  5'- gUGCGCGG--UCA--CGGCGCGCCGg- -3'
miRNA:   3'- -ACGUGCUguAGUcgGCCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 16937 0.67 0.610611
Target:  5'- gGC-CGACGUUGGCCGuCGCcaCCGUGa -3'
miRNA:   3'- aCGuGCUGUAGUCGGCcGCGc-GGCAC- -5'
25532 5' -60.1 NC_005337.1 + 17170 0.66 0.700813
Target:  5'- cGCAuaucacCGACAgcgcCAGCagGGCGCGCgGUa -3'
miRNA:   3'- aCGU------GCUGUa---GUCGg-CCGCGCGgCAc -5'
25532 5' -60.1 NC_005337.1 + 18704 0.68 0.58055
Target:  5'- cGCucaGACAcgCGGCCagucGCGCGCUGUGc -3'
miRNA:   3'- aCGug-CUGUa-GUCGGc---CGCGCGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.