miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25533 3' -55.4 NC_005337.1 + 66326 0.75 0.412802
Target:  5'- -gUCG-CGGGCuGGcgacacguGCUCGUGGAGCg -3'
miRNA:   3'- caAGCaGCUCGuCCu-------CGAGCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 70137 0.69 0.769137
Target:  5'- --cCGUCaGGGaCAGGuGCUUGUuucGGAGCg -3'
miRNA:   3'- caaGCAG-CUC-GUCCuCGAGCA---CCUCG- -5'
25533 3' -55.4 NC_005337.1 + 72228 0.69 0.778594
Target:  5'- -aUCGUCGAGUGGGGGCgcgccuUCGUaGAcGCc -3'
miRNA:   3'- caAGCAGCUCGUCCUCG------AGCAcCU-CG- -5'
25533 3' -55.4 NC_005337.1 + 72369 0.7 0.740052
Target:  5'- --aCGUCGAGaucGGGGacaUCGUGGuGCa -3'
miRNA:   3'- caaGCAGCUCgu-CCUCg--AGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 77625 0.66 0.918072
Target:  5'- -cUCGUaGAGCAGcGAGUgCGUGacguaGAGCg -3'
miRNA:   3'- caAGCAgCUCGUC-CUCGaGCAC-----CUCG- -5'
25533 3' -55.4 NC_005337.1 + 80241 0.66 0.888996
Target:  5'- ---gGUCGgcguacaucuccagcGGCAGGAGCUCGaucuUGG-GCu -3'
miRNA:   3'- caagCAGC---------------UCGUCCUCGAGC----ACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 88091 0.66 0.906052
Target:  5'- --cCGUgGAcauGguGGAcGC-CGUGGAGCg -3'
miRNA:   3'- caaGCAgCU---CguCCU-CGaGCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 93661 0.7 0.730152
Target:  5'- cUUCGUCGAGCuccuGGAGgUCcguuUGGuGCg -3'
miRNA:   3'- cAAGCAGCUCGu---CCUCgAGc---ACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 94215 0.67 0.871863
Target:  5'- cGUUCGgacacuagCGGGCGGuGAGCUCGaugucggucUGGuucaGGCg -3'
miRNA:   3'- -CAAGCa-------GCUCGUC-CUCGAGC---------ACC----UCG- -5'
25533 3' -55.4 NC_005337.1 + 95887 0.72 0.607244
Target:  5'- -aUCGUCuAGCAGGGcGCUCGUGcucgcGGCg -3'
miRNA:   3'- caAGCAGcUCGUCCU-CGAGCACc----UCG- -5'
25533 3' -55.4 NC_005337.1 + 98033 0.71 0.638276
Target:  5'- --cCGaCGGGCuGGGGUUCGUccgGGAGCg -3'
miRNA:   3'- caaGCaGCUCGuCCUCGAGCA---CCUCG- -5'
25533 3' -55.4 NC_005337.1 + 98975 0.67 0.864347
Target:  5'- cUUCGacuccgCGAGCGGG-GCcgagGUGGAGCc -3'
miRNA:   3'- cAAGCa-----GCUCGUCCuCGag--CACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 100237 0.7 0.710101
Target:  5'- --cCGUCGAcgGCA--AGCUCGUGGAGg -3'
miRNA:   3'- caaGCAGCU--CGUccUCGAGCACCUCg -5'
25533 3' -55.4 NC_005337.1 + 105476 0.68 0.831364
Target:  5'- -gUCGUgcugcggcgcaUGAGCaagauccGGGAGUUCGUGGcGCa -3'
miRNA:   3'- caAGCA-----------GCUCG-------UCCUCGAGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 106255 0.68 0.797098
Target:  5'- --gCGgcaggCGAuGCAGG-GCagCGUGGAGCa -3'
miRNA:   3'- caaGCa----GCU-CGUCCuCGa-GCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 108885 0.67 0.848679
Target:  5'- -gUCGUCGAcggcggcgGCAGcGAGCgCGUG-AGCa -3'
miRNA:   3'- caAGCAGCU--------CGUC-CUCGaGCACcUCG- -5'
25533 3' -55.4 NC_005337.1 + 113126 0.67 0.870378
Target:  5'- --gCGUCGAGCAGGAcgcgcugcgguacguGCUguucgcggugcgcugCGUGGcGGCc -3'
miRNA:   3'- caaGCAGCUCGUCCU---------------CGA---------------GCACC-UCG- -5'
25533 3' -55.4 NC_005337.1 + 114909 0.66 0.918072
Target:  5'- ----uUCGAGCAGGGGCagugcaugaUCGgGGAGa -3'
miRNA:   3'- caagcAGCUCGUCCUCG---------AGCaCCUCg -5'
25533 3' -55.4 NC_005337.1 + 116111 1.11 0.001969
Target:  5'- aGUUCGUCGAGCAGGAGCUCGUGGAGCu -3'
miRNA:   3'- -CAAGCAGCUCGUCCUCGAGCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 118079 0.67 0.87916
Target:  5'- -gUUGUaGAGCuccucGGGGCUCuccggcgcgugGUGGAGCa -3'
miRNA:   3'- caAGCAgCUCGu----CCUCGAG-----------CACCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.