miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25533 3' -55.4 NC_005337.1 + 892 0.68 0.823689
Target:  5'- --gCGcCGAGCAGGAGCccgagcgCGacGAGCg -3'
miRNA:   3'- caaGCaGCUCGUCCUCGa------GCacCUCG- -5'
25533 3' -55.4 NC_005337.1 + 892 0.68 0.823689
Target:  5'- --gCGcCGAGCAGGAGCccgagcgCGacGAGCg -3'
miRNA:   3'- caaGCaGCUCGUCCUCGa------GCacCUCG- -5'
25533 3' -55.4 NC_005337.1 + 2333 0.68 0.823689
Target:  5'- ---aGUUGAGCAGGuacAGCUCc-GGGGCc -3'
miRNA:   3'- caagCAGCUCGUCC---UCGAGcaCCUCG- -5'
25533 3' -55.4 NC_005337.1 + 2388 0.68 0.832208
Target:  5'- --gCGUCGAcgacacgcGCAGGcggaAGCggucgcaCGUGGAGCg -3'
miRNA:   3'- caaGCAGCU--------CGUCC----UCGa------GCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 6875 0.66 0.906052
Target:  5'- -cUCGUagaGGGC-GGcGCUCGcccUGGAGCc -3'
miRNA:   3'- caAGCAg--CUCGuCCuCGAGC---ACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 13398 0.66 0.918072
Target:  5'- --cCGUgCGGGC-GGAGCga-UGGAGCu -3'
miRNA:   3'- caaGCA-GCUCGuCCUCGagcACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 17589 0.69 0.769137
Target:  5'- aUUUGgcauugGAGCGGGAGCUgGagcgGGAGCu -3'
miRNA:   3'- cAAGCag----CUCGUCCUCGAgCa---CCUCG- -5'
25533 3' -55.4 NC_005337.1 + 21414 0.73 0.525838
Target:  5'- -aUCGUCGAcGUGGGccgcggccAGCUCGcGGAGCu -3'
miRNA:   3'- caAGCAGCU-CGUCC--------UCGAGCaCCUCG- -5'
25533 3' -55.4 NC_005337.1 + 24215 0.72 0.627926
Target:  5'- --gCGUCGAGguGGAGCUgcccccggcCGUGGccucgcucaucaAGCa -3'
miRNA:   3'- caaGCAGCUCguCCUCGA---------GCACC------------UCG- -5'
25533 3' -55.4 NC_005337.1 + 24586 0.67 0.87916
Target:  5'- ---aG-CGAGCAGaccaucGAGCUCGUGGccuucGGCg -3'
miRNA:   3'- caagCaGCUCGUC------CUCGAGCACC-----UCG- -5'
25533 3' -55.4 NC_005337.1 + 36698 0.66 0.893073
Target:  5'- --gCGUCcacgGAGUucAGGGGCUUGUGGAa- -3'
miRNA:   3'- caaGCAG----CUCG--UCCUCGAGCACCUcg -5'
25533 3' -55.4 NC_005337.1 + 39607 0.68 0.823689
Target:  5'- cUUCGgCGGGCGGGAGCggaUCGUcucGcGGGCc -3'
miRNA:   3'- cAAGCaGCUCGUCCUCG---AGCA---C-CUCG- -5'
25533 3' -55.4 NC_005337.1 + 41850 0.83 0.162809
Target:  5'- -cUCGUCGGGCGGGAGCgggcUCGUGGcGUa -3'
miRNA:   3'- caAGCAGCUCGUCCUCG----AGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 42773 0.66 0.917494
Target:  5'- cGUUCGugugcUCGGGCGGcAGCgugaccuUCGUGGcGGCg -3'
miRNA:   3'- -CAAGC-----AGCUCGUCcUCG-------AGCACC-UCG- -5'
25533 3' -55.4 NC_005337.1 + 47530 0.7 0.730152
Target:  5'- -aUCGUgccgGAGCGGGAcCUCGUGG-GCc -3'
miRNA:   3'- caAGCAg---CUCGUCCUcGAGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 51501 0.67 0.871863
Target:  5'- --cCGUCGucaaccucacGCcGGuGUUCGUGGAGCc -3'
miRNA:   3'- caaGCAGCu---------CGuCCuCGAGCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 56312 0.68 0.823689
Target:  5'- -cUCGagaUCucGCAGGAGCgcuUCGUGGuGCu -3'
miRNA:   3'- caAGC---AGcuCGUCCUCG---AGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 60479 0.75 0.439699
Target:  5'- ---aGUCGAGCGuGAGCUCGUGcGGCu -3'
miRNA:   3'- caagCAGCUCGUcCUCGAGCACcUCG- -5'
25533 3' -55.4 NC_005337.1 + 63355 0.67 0.87916
Target:  5'- ---aGUCGAGgAGGAGCUgcagaaccaggaCGUGGcuuccggaGGCg -3'
miRNA:   3'- caagCAGCUCgUCCUCGA------------GCACC--------UCG- -5'
25533 3' -55.4 NC_005337.1 + 64374 0.66 0.893073
Target:  5'- --gCG-CGcGCAGGAGCacgUUGUcGGAGCg -3'
miRNA:   3'- caaGCaGCuCGUCCUCG---AGCA-CCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.