miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25533 3' -55.4 NC_005337.1 + 116111 1.11 0.001969
Target:  5'- aGUUCGUCGAGCAGGAGCUCGUGGAGCu -3'
miRNA:   3'- -CAAGCAGCUCGUCCUCGAGCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 41850 0.83 0.162809
Target:  5'- -cUCGUCGGGCGGGAGCgggcUCGUGGcGUa -3'
miRNA:   3'- caAGCAGCUCGUCCUCG----AGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 66326 0.75 0.412802
Target:  5'- -gUCG-CGGGCuGGcgacacguGCUCGUGGAGCg -3'
miRNA:   3'- caAGCaGCUCGuCCu-------CGAGCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 60479 0.75 0.439699
Target:  5'- ---aGUCGAGCGuGAGCUCGUGcGGCu -3'
miRNA:   3'- caagCAGCUCGUcCUCGAGCACcUCG- -5'
25533 3' -55.4 NC_005337.1 + 21414 0.73 0.525838
Target:  5'- -aUCGUCGAcGUGGGccgcggccAGCUCGcGGAGCu -3'
miRNA:   3'- caAGCAGCU-CGUCC--------UCGAGCaCCUCG- -5'
25533 3' -55.4 NC_005337.1 + 95887 0.72 0.607244
Target:  5'- -aUCGUCuAGCAGGGcGCUCGUGcucgcGGCg -3'
miRNA:   3'- caAGCAGcUCGUCCU-CGAGCACc----UCG- -5'
25533 3' -55.4 NC_005337.1 + 24215 0.72 0.627926
Target:  5'- --gCGUCGAGguGGAGCUgcccccggcCGUGGccucgcucaucaAGCa -3'
miRNA:   3'- caaGCAGCUCguCCUCGA---------GCACC------------UCG- -5'
25533 3' -55.4 NC_005337.1 + 98033 0.71 0.638276
Target:  5'- --cCGaCGGGCuGGGGUUCGUccgGGAGCg -3'
miRNA:   3'- caaGCaGCUCGuCCUCGAGCA---CCUCG- -5'
25533 3' -55.4 NC_005337.1 + 125498 0.71 0.679541
Target:  5'- -cUCGgcaUCGAGguGGAGgUCGUGcGGCu -3'
miRNA:   3'- caAGC---AGCUCguCCUCgAGCACcUCG- -5'
25533 3' -55.4 NC_005337.1 + 122662 0.7 0.68978
Target:  5'- -cUCGUCGAGCAGGuGGCcCGccgGGuGUg -3'
miRNA:   3'- caAGCAGCUCGUCC-UCGaGCa--CCuCG- -5'
25533 3' -55.4 NC_005337.1 + 100237 0.7 0.710101
Target:  5'- --cCGUCGAcgGCA--AGCUCGUGGAGg -3'
miRNA:   3'- caaGCAGCU--CGUccUCGAGCACCUCg -5'
25533 3' -55.4 NC_005337.1 + 133444 0.7 0.714136
Target:  5'- cUUCGUCGAGCccGGGcccgcgcgcgcggacGGCUCcGcGGAGCu -3'
miRNA:   3'- cAAGCAGCUCG--UCC---------------UCGAG-CaCCUCG- -5'
25533 3' -55.4 NC_005337.1 + 133444 0.7 0.714136
Target:  5'- cUUCGUCGAGCccGGGcccgcgcgcgcggacGGCUCcGcGGAGCu -3'
miRNA:   3'- cAAGCAGCUCG--UCC---------------UCGAG-CaCCUCG- -5'
25533 3' -55.4 NC_005337.1 + 47530 0.7 0.730152
Target:  5'- -aUCGUgccgGAGCGGGAcCUCGUGG-GCc -3'
miRNA:   3'- caAGCAg---CUCGUCCUcGAGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 93661 0.7 0.730152
Target:  5'- cUUCGUCGAGCuccuGGAGgUCcguuUGGuGCg -3'
miRNA:   3'- cAAGCAGCUCGu---CCUCgAGc---ACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 72369 0.7 0.740052
Target:  5'- --aCGUCGAGaucGGGGacaUCGUGGuGCa -3'
miRNA:   3'- caaGCAGCUCgu-CCUCg--AGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 123620 0.69 0.749856
Target:  5'- -cUCG-CGGGUgcuGAcGCUCGUGGAGCu -3'
miRNA:   3'- caAGCaGCUCGuc-CU-CGAGCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 131072 0.69 0.759554
Target:  5'- aGggCGaCGAGCGcGAGUUCGUGGucuGCg -3'
miRNA:   3'- -CaaGCaGCUCGUcCUCGAGCACCu--CG- -5'
25533 3' -55.4 NC_005337.1 + 70137 0.69 0.769137
Target:  5'- --cCGUCaGGGaCAGGuGCUUGUuucGGAGCg -3'
miRNA:   3'- caaGCAG-CUC-GUCCuCGAGCA---CCUCG- -5'
25533 3' -55.4 NC_005337.1 + 17589 0.69 0.769137
Target:  5'- aUUUGgcauugGAGCGGGAGCUgGagcgGGAGCu -3'
miRNA:   3'- cAAGCag----CUCGUCCUCGAgCa---CCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.