Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25535 | 5' | -55.9 | NC_005337.1 | + | 52699 | 0.66 | 0.877992 |
Target: 5'- -aUCCUGGUGUaCGcGCaGGAGuacgacccguACAUGUc -3' miRNA: 3'- caAGGACCACA-GC-CGgCCUC----------UGUACG- -5' |
|||||||
25535 | 5' | -55.9 | NC_005337.1 | + | 130529 | 0.66 | 0.882974 |
Target: 5'- aGUUCCUGGUGcgcgCGGgCGccaacgucaacgacGGGAUcgGCu -3' miRNA: 3'- -CAAGGACCACa---GCCgGC--------------CUCUGuaCG- -5' |
|||||||
25535 | 5' | -55.9 | NC_005337.1 | + | 79788 | 0.66 | 0.885076 |
Target: 5'- -cUCCcagaUGGUGUCGGacgaGGAguuuauggcGACGUGCc -3' miRNA: 3'- caAGG----ACCACAGCCgg--CCU---------CUGUACG- -5' |
|||||||
25535 | 5' | -55.9 | NC_005337.1 | + | 93264 | 0.66 | 0.885076 |
Target: 5'- uGUUUaUGGUGgcgaGGCCGGGGG--UGCg -3' miRNA: 3'- -CAAGgACCACag--CCGGCCUCUguACG- -5' |
|||||||
25535 | 5' | -55.9 | NC_005337.1 | + | 5863 | 0.66 | 0.904946 |
Target: 5'- --cCCUGGUGgggagcgUGGCguugGGGGACAgGCg -3' miRNA: 3'- caaGGACCACa------GCCGg---CCUCUGUaCG- -5' |
|||||||
25535 | 5' | -55.9 | NC_005337.1 | + | 117447 | 0.66 | 0.904946 |
Target: 5'- cUUCCUGGUG-Ca--CGGGGACAcGCu -3' miRNA: 3'- cAAGGACCACaGccgGCCUCUGUaCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home