miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25537 5' -63 NC_005337.1 + 3192 0.68 0.5001
Target:  5'- gGGGcGUCUUCCCcGUGAACGagcgcaGGGUCa -3'
miRNA:   3'- gCCC-UAGGGGGGcCACUUGCg-----CCCGG- -5'
25537 5' -63 NC_005337.1 + 5854 0.76 0.169293
Target:  5'- gCGGGGaCCCCCUGGUGGGgaGCGuGGCg -3'
miRNA:   3'- -GCCCUaGGGGGGCCACUUg-CGC-CCGg -5'
25537 5' -63 NC_005337.1 + 7712 0.7 0.39665
Target:  5'- aGGGAcUCCCUcuccgcuaCCGGUGAGC-CGGuaGCCg -3'
miRNA:   3'- gCCCU-AGGGG--------GGCCACUUGcGCC--CGG- -5'
25537 5' -63 NC_005337.1 + 10600 0.66 0.623517
Target:  5'- --cGGUCCCgCCgCGGggGAGCGgCGGcGCCa -3'
miRNA:   3'- gccCUAGGG-GG-GCCa-CUUGC-GCC-CGG- -5'
25537 5' -63 NC_005337.1 + 14590 0.73 0.248618
Target:  5'- cCGGGAagccuUCCCUuguacaggucggucuCCGGUGAcUGCGGGCa -3'
miRNA:   3'- -GCCCU-----AGGGG---------------GGCCACUuGCGCCCGg -5'
25537 5' -63 NC_005337.1 + 16963 0.74 0.209559
Target:  5'- aCGGGAUCCCCgCGGUGuuCGCGuacGCg -3'
miRNA:   3'- -GCCCUAGGGGgGCCACuuGCGCc--CGg -5'
25537 5' -63 NC_005337.1 + 16998 0.68 0.464167
Target:  5'- gCGGGA-CCCCgCCGacucgucgGggUcuGCGGGCCg -3'
miRNA:   3'- -GCCCUaGGGG-GGCca------CuuG--CGCCCGG- -5'
25537 5' -63 NC_005337.1 + 28715 0.69 0.412937
Target:  5'- uCGGGGUCCgugugcguccugCCCCagcgGGUGGACGCGcuGCUg -3'
miRNA:   3'- -GCCCUAGG------------GGGG----CCACUUGCGCc-CGG- -5'
25537 5' -63 NC_005337.1 + 30365 0.66 0.627397
Target:  5'- gCGGGAUCUCgaCCUGGUacuucuugcaggugaGGAUGuCGaGGCCg -3'
miRNA:   3'- -GCCCUAGGG--GGGCCA---------------CUUGC-GC-CCGG- -5'
25537 5' -63 NC_005337.1 + 31617 0.66 0.613822
Target:  5'- aGGGG-CCgCCCUGcauGGCGCGGGCg -3'
miRNA:   3'- gCCCUaGG-GGGGCcacUUGCGCCCGg -5'
25537 5' -63 NC_005337.1 + 34018 0.7 0.380783
Target:  5'- gCGGuaGGUgCUCCCGGUcAugGCGGGCg -3'
miRNA:   3'- -GCC--CUAgGGGGGCCAcUugCGCCCGg -5'
25537 5' -63 NC_005337.1 + 34130 0.67 0.518524
Target:  5'- aGGGAgaaCUCCCGcacGAACGCGGGgUg -3'
miRNA:   3'- gCCCUag-GGGGGCca-CUUGCGCCCgG- -5'
25537 5' -63 NC_005337.1 + 35758 0.7 0.404741
Target:  5'- gCGGGcUCCCCCCGGccuugccgcgGAACuCGGGg- -3'
miRNA:   3'- -GCCCuAGGGGGGCCa---------CUUGcGCCCgg -5'
25537 5' -63 NC_005337.1 + 36721 0.72 0.304005
Target:  5'- gCGaGGAUCUUCUCGGUGAAgacgugguacuuguuCuGCGGGCCc -3'
miRNA:   3'- -GC-CCUAGGGGGGCCACUU---------------G-CGCCCGG- -5'
25537 5' -63 NC_005337.1 + 40851 0.68 0.464167
Target:  5'- aCGGGAcacgcgucgccgUgCCCCCGGUgcaGAGgGC-GGCCg -3'
miRNA:   3'- -GCCCU------------AgGGGGGCCA---CUUgCGcCCGG- -5'
25537 5' -63 NC_005337.1 + 49336 0.71 0.350345
Target:  5'- cCGGGAccugaUCUCCCUGGUGAAagaaaaaauCGCGGaggcggcgaccGCCg -3'
miRNA:   3'- -GCCCU-----AGGGGGGCCACUU---------GCGCC-----------CGG- -5'
25537 5' -63 NC_005337.1 + 55935 0.66 0.575228
Target:  5'- uCGaGAccgCgCCCCGGcUGGaccugcagcuugGCGCGGGCCa -3'
miRNA:   3'- -GCcCUa--GgGGGGCC-ACU------------UGCGCCCGG- -5'
25537 5' -63 NC_005337.1 + 56916 0.68 0.481074
Target:  5'- gCGGGAUCCggggcuaCUUCGG-GGACaGCGuGGCCu -3'
miRNA:   3'- -GCCCUAGG-------GGGGCCaCUUG-CGC-CCGG- -5'
25537 5' -63 NC_005337.1 + 60807 0.72 0.275814
Target:  5'- uGGGGUCCUCCgCGG-GcACGCGGcaccGCCg -3'
miRNA:   3'- gCCCUAGGGGG-GCCaCuUGCGCC----CGG- -5'
25537 5' -63 NC_005337.1 + 68122 0.68 0.509277
Target:  5'- uCGGGGUCgCggggCCGGUGGccGCGCGcGCCc -3'
miRNA:   3'- -GCCCUAGgGg---GGCCACU--UGCGCcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.