miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25537 5' -63 NC_005337.1 + 5854 0.76 0.169293
Target:  5'- gCGGGGaCCCCCUGGUGGGgaGCGuGGCg -3'
miRNA:   3'- -GCCCUaGGGGGGCCACUUg-CGC-CCGg -5'
25537 5' -63 NC_005337.1 + 117325 0.66 0.623517
Target:  5'- gGGGAUCgCCgucaCGGUGGcgacggccaACGUcGGCCg -3'
miRNA:   3'- gCCCUAGgGGg---GCCACU---------UGCGcCCGG- -5'
25537 5' -63 NC_005337.1 + 31617 0.66 0.613822
Target:  5'- aGGGG-CCgCCCUGcauGGCGCGGGCg -3'
miRNA:   3'- gCCCUaGG-GGGGCcacUUGCGCCCGg -5'
25537 5' -63 NC_005337.1 + 108958 0.67 0.556125
Target:  5'- uGGGGUCguacacgCgCCGGUcGACGCGcGGCCc -3'
miRNA:   3'- gCCCUAGg------GgGGCCAcUUGCGC-CCGG- -5'
25537 5' -63 NC_005337.1 + 34130 0.67 0.518524
Target:  5'- aGGGAgaaCUCCCGcacGAACGCGGGgUg -3'
miRNA:   3'- gCCCUag-GGGGGCca-CUUGCGCCCgG- -5'
25537 5' -63 NC_005337.1 + 68122 0.68 0.509277
Target:  5'- uCGGGGUCgCggggCCGGUGGccGCGCGcGCCc -3'
miRNA:   3'- -GCCCUAGgGg---GGCCACU--UGCGCcCGG- -5'
25537 5' -63 NC_005337.1 + 3192 0.68 0.5001
Target:  5'- gGGGcGUCUUCCCcGUGAACGagcgcaGGGUCa -3'
miRNA:   3'- gCCC-UAGGGGGGcCACUUGCg-----CCCGG- -5'
25537 5' -63 NC_005337.1 + 102981 0.68 0.481971
Target:  5'- aCGGGuacuucugCCCCUCGGacgugcccGAGCGCGGcCCg -3'
miRNA:   3'- -GCCCua------GGGGGGCCa-------CUUGCGCCcGG- -5'
25537 5' -63 NC_005337.1 + 40851 0.68 0.464167
Target:  5'- aCGGGAcacgcgucgccgUgCCCCCGGUgcaGAGgGC-GGCCg -3'
miRNA:   3'- -GCCCU------------AgGGGGGCCA---CUUgCGcCCGG- -5'
25537 5' -63 NC_005337.1 + 16998 0.68 0.464167
Target:  5'- gCGGGA-CCCCgCCGacucgucgGggUcuGCGGGCCg -3'
miRNA:   3'- -GCCCUaGGGG-GGCca------CuuG--CGCCCGG- -5'
25537 5' -63 NC_005337.1 + 98042 0.74 0.224716
Target:  5'- uGGGGUUCgUCCGG-GAGCGCGccgcGGCCg -3'
miRNA:   3'- gCCCUAGGgGGGCCaCUUGCGC----CCGG- -5'
25537 5' -63 NC_005337.1 + 98999 0.7 0.37301
Target:  5'- gGuGGAgccgCCCCCCGaGgu-GCGCGcGGCCu -3'
miRNA:   3'- gC-CCUa---GGGGGGC-CacuUGCGC-CCGG- -5'
25537 5' -63 NC_005337.1 + 91211 0.7 0.388663
Target:  5'- aCGGGcgCgCCgCCGGUGGucaGCGCGuccauguggucGGCCa -3'
miRNA:   3'- -GCCCuaGgGG-GGCCACU---UGCGC-----------CCGG- -5'
25537 5' -63 NC_005337.1 + 118180 0.7 0.388663
Target:  5'- gGcGGAcccguucgagcUCgCgCCGGUGGGCGCGGaGCCg -3'
miRNA:   3'- gC-CCU-----------AGgGgGGCCACUUGCGCC-CGG- -5'
25537 5' -63 NC_005337.1 + 7712 0.7 0.39665
Target:  5'- aGGGAcUCCCUcuccgcuaCCGGUGAGC-CGGuaGCCg -3'
miRNA:   3'- gCCCU-AGGGG--------GGCCACUUGcGCC--CGG- -5'
25537 5' -63 NC_005337.1 + 35758 0.7 0.404741
Target:  5'- gCGGGcUCCCCCCGGccuugccgcgGAACuCGGGg- -3'
miRNA:   3'- -GCCCuAGGGGGGCCa---------CUUGcGCCCgg -5'
25537 5' -63 NC_005337.1 + 102423 0.69 0.455395
Target:  5'- gGGGAcaUCCCCGaguacGUGAACGCGcucaucgcGGCCg -3'
miRNA:   3'- gCCCUagGGGGGC-----CACUUGCGC--------CCGG- -5'
25537 5' -63 NC_005337.1 + 132674 0.66 0.628367
Target:  5'- aCGGGAUCacgCCCCUGGacaacaucgucGCGCacaaccuGGGCCg -3'
miRNA:   3'- -GCCCUAG---GGGGGCCacu--------UGCG-------CCCGG- -5'
25537 5' -63 NC_005337.1 + 16963 0.74 0.209559
Target:  5'- aCGGGAUCCCCgCGGUGuuCGCGuacGCg -3'
miRNA:   3'- -GCCCUAGGGGgGCCACuuGCGCc--CGg -5'
25537 5' -63 NC_005337.1 + 14590 0.73 0.248618
Target:  5'- cCGGGAagccuUCCCUuguacaggucggucuCCGGUGAcUGCGGGCa -3'
miRNA:   3'- -GCCCU-----AGGGG---------------GGCCACUuGCGCCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.