miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25538 5' -54.9 NC_005337.1 + 21140 0.7 0.767507
Target:  5'- aCAGcACGUACCgcagcgcgUCCugCUCga-CGCCg -3'
miRNA:   3'- gGUC-UGCAUGG--------AGGugGAGaagGCGG- -5'
25538 5' -54.9 NC_005337.1 + 22926 0.69 0.846483
Target:  5'- aCAG-CGU-CCUCCGCUaCUUCCuggacGCCa -3'
miRNA:   3'- gGUCuGCAuGGAGGUGGaGAAGG-----CGG- -5'
25538 5' -54.9 NC_005337.1 + 23120 0.71 0.748407
Target:  5'- uCCGGACGcuggugcGCCgcuucaagcacaUCCugCUCUUCaCGCCc -3'
miRNA:   3'- -GGUCUGCa------UGG------------AGGugGAGAAG-GCGG- -5'
25538 5' -54.9 NC_005337.1 + 24418 0.68 0.854388
Target:  5'- gCCGGGCuGUGCgUgCACCUCaagUUCGCg -3'
miRNA:   3'- -GGUCUG-CAUGgAgGUGGAGa--AGGCGg -5'
25538 5' -54.9 NC_005337.1 + 24801 0.66 0.937105
Target:  5'- gCUGGACG-ACCggCGCCagUUCCGCg -3'
miRNA:   3'- -GGUCUGCaUGGagGUGGagAAGGCGg -5'
25538 5' -54.9 NC_005337.1 + 25490 0.68 0.883237
Target:  5'- aCC-GACGUcagcgACUUCCGCgUCUUcaacccguguuugCCGCCg -3'
miRNA:   3'- -GGuCUGCA-----UGGAGGUGgAGAA-------------GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 25649 0.72 0.64825
Target:  5'- aCGGccGCGUcgAUCUCCACCUCggcgCCGCg -3'
miRNA:   3'- gGUC--UGCA--UGGAGGUGGAGaa--GGCGg -5'
25538 5' -54.9 NC_005337.1 + 26105 0.66 0.946311
Target:  5'- gCCGGAUGU-CCaCCGCggcgaUC-UCCGCCu -3'
miRNA:   3'- -GGUCUGCAuGGaGGUGg----AGaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 29449 0.69 0.838384
Target:  5'- gCAGACGaaUACCUCCugCgcgUCCuCCu -3'
miRNA:   3'- gGUCUGC--AUGGAGGugGagaAGGcGG- -5'
25538 5' -54.9 NC_005337.1 + 33055 0.67 0.903772
Target:  5'- gCGGAC--GCCUCCGCgaCcUCCGCg -3'
miRNA:   3'- gGUCUGcaUGGAGGUGgaGaAGGCGg -5'
25538 5' -54.9 NC_005337.1 + 33189 0.67 0.919833
Target:  5'- gCCGGACGggcCCUCCcgacggcggggcgcGCCUCUcagaggagUUCGCg -3'
miRNA:   3'- -GGUCUGCau-GGAGG--------------UGGAGA--------AGGCGg -5'
25538 5' -54.9 NC_005337.1 + 33918 0.69 0.812993
Target:  5'- uCCGcGACGU-CgUCCGCUUUUUCCugGCCg -3'
miRNA:   3'- -GGU-CUGCAuGgAGGUGGAGAAGG--CGG- -5'
25538 5' -54.9 NC_005337.1 + 33921 0.66 0.932146
Target:  5'- uUCAGGCGcccCCgagCGCCUUcacgUCCGCCa -3'
miRNA:   3'- -GGUCUGCau-GGag-GUGGAGa---AGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 34571 0.69 0.846483
Target:  5'- --cGGCGU-CCUCCuCCUCgaaggUCGCCg -3'
miRNA:   3'- gguCUGCAuGGAGGuGGAGaa---GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 35009 0.67 0.897389
Target:  5'- aCGGcCGUGCCgaaccCCGCgUCgccgUCCGCg -3'
miRNA:   3'- gGUCuGCAUGGa----GGUGgAGa---AGGCGg -5'
25538 5' -54.9 NC_005337.1 + 35247 0.67 0.915835
Target:  5'- aCCuGGCGU-CCagCGCCUCgcaggCCGCg -3'
miRNA:   3'- -GGuCUGCAuGGagGUGGAGaa---GGCGg -5'
25538 5' -54.9 NC_005337.1 + 35286 0.69 0.830098
Target:  5'- -gGGGCGg--CUCCACCUCggccCCGCUc -3'
miRNA:   3'- ggUCUGCaugGAGGUGGAGaa--GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 37767 0.73 0.638021
Target:  5'- cCCGGACGcGCCUCCccuGCCUaucgUUCCcagGCCa -3'
miRNA:   3'- -GGUCUGCaUGGAGG---UGGAg---AAGG---CGG- -5'
25538 5' -54.9 NC_005337.1 + 37860 0.69 0.821631
Target:  5'- uCCAGgagcACGgucuuCUgcgCCACCUCguccUCCGCCg -3'
miRNA:   3'- -GGUC----UGCau---GGa--GGUGGAGa---AGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 38514 0.7 0.755142
Target:  5'- cCCGGGCGcGCCUggugcagggcCCGCCgugcgacucgcucuUCUUCCGUCc -3'
miRNA:   3'- -GGUCUGCaUGGA----------GGUGG--------------AGAAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.