miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25538 5' -54.9 NC_005337.1 + 5538 0.66 0.946311
Target:  5'- uCCAGGC--ACg-CCACCUCUUCCa-- -3'
miRNA:   3'- -GGUCUGcaUGgaGGUGGAGAAGGcgg -5'
25538 5' -54.9 NC_005337.1 + 7146 0.67 0.903772
Target:  5'- gCGGACG-AUgUCCGCCUCggaccCCGUg -3'
miRNA:   3'- gGUCUGCaUGgAGGUGGAGaa---GGCGg -5'
25538 5' -54.9 NC_005337.1 + 7230 0.67 0.921511
Target:  5'- uUCGGuGCGcACCUCCGCgC-CcgCCGCCa -3'
miRNA:   3'- -GGUC-UGCaUGGAGGUG-GaGaaGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 8442 0.67 0.921511
Target:  5'- --uGAUGUA-CUCCGCUUCa-CCGCCg -3'
miRNA:   3'- gguCUGCAUgGAGGUGGAGaaGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 8704 0.67 0.921511
Target:  5'- gUAGAUGUACCUggCCAgCacgCUUCUGCa -3'
miRNA:   3'- gGUCUGCAUGGA--GGUgGa--GAAGGCGg -5'
25538 5' -54.9 NC_005337.1 + 8774 0.74 0.546655
Target:  5'- gCCGcACG-ACCUCCACCUCga-UGCCg -3'
miRNA:   3'- -GGUcUGCaUGGAGGUGGAGaagGCGG- -5'
25538 5' -54.9 NC_005337.1 + 10572 0.71 0.719015
Target:  5'- aCGGGCGUGCCcagCCGCCgcaCggcgUCCGUg -3'
miRNA:   3'- gGUCUGCAUGGa--GGUGGa--Ga---AGGCGg -5'
25538 5' -54.9 NC_005337.1 + 10747 0.76 0.469141
Target:  5'- -gGGACGUGCaCUCgACCUCgagcUCCGCa -3'
miRNA:   3'- ggUCUGCAUG-GAGgUGGAGa---AGGCGg -5'
25538 5' -54.9 NC_005337.1 + 11789 0.71 0.705054
Target:  5'- cCCAGACGgacggucgccaugACCgCCACCUCUgccUCGCa -3'
miRNA:   3'- -GGUCUGCa------------UGGaGGUGGAGAa--GGCGg -5'
25538 5' -54.9 NC_005337.1 + 12839 0.69 0.846483
Target:  5'- gCAGcAgGUcuaucACCUCCACgCUCUUgUCGCCg -3'
miRNA:   3'- gGUC-UgCA-----UGGAGGUG-GAGAA-GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 12954 0.66 0.946311
Target:  5'- gCGGACGU-CCUCgACCg--UCaCGUCg -3'
miRNA:   3'- gGUCUGCAuGGAGgUGGagaAG-GCGG- -5'
25538 5' -54.9 NC_005337.1 + 13618 0.67 0.923714
Target:  5'- gCCGGGCGUcGCCgccgagggacagggCCACCUCcUCgaucgugaCGCCc -3'
miRNA:   3'- -GGUCUGCA-UGGa-------------GGUGGAGaAG--------GCGG- -5'
25538 5' -54.9 NC_005337.1 + 16345 0.68 0.869587
Target:  5'- gCCAGAUGUgaagcacccagaACCUCCugCgugCUcaagguggacCCGCCa -3'
miRNA:   3'- -GGUCUGCA------------UGGAGGugGa--GAa---------GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 17077 0.71 0.719015
Target:  5'- aCAGGCGggcgGCaCUCCAgCUCUUCCa-- -3'
miRNA:   3'- gGUCUGCa---UG-GAGGUgGAGAAGGcgg -5'
25538 5' -54.9 NC_005337.1 + 17369 0.68 0.865114
Target:  5'- uUAGGCGaguuacugcuuaaauUACCUCUucguCCUCUUCgGCUg -3'
miRNA:   3'- gGUCUGC---------------AUGGAGGu---GGAGAAGgCGG- -5'
25538 5' -54.9 NC_005337.1 + 18903 0.68 0.87687
Target:  5'- uCCAGguGCGUGCUccCCACCacgUCCGCg -3'
miRNA:   3'- -GGUC--UGCAUGGa-GGUGGagaAGGCGg -5'
25538 5' -54.9 NC_005337.1 + 18953 0.66 0.925879
Target:  5'- gCCGGGCGU-CCgagcacgguguaCCACCg--UCCGUCg -3'
miRNA:   3'- -GGUCUGCAuGGa-----------GGUGGagaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 19126 0.67 0.890775
Target:  5'- gUCGGACGcagGCCUCCGCCacg-CgCGUCg -3'
miRNA:   3'- -GGUCUGCa--UGGAGGUGGagaaG-GCGG- -5'
25538 5' -54.9 NC_005337.1 + 19446 0.66 0.946311
Target:  5'- uCCucGGCGUagugccgguacGCCUgCACCUCcccCUGCCg -3'
miRNA:   3'- -GGu-CUGCA-----------UGGAgGUGGAGaa-GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 19734 0.67 0.909922
Target:  5'- uCCAcGAUG-GCCUCCAUCaUCUcgUCCGUg -3'
miRNA:   3'- -GGU-CUGCaUGGAGGUGG-AGA--AGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.