miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25538 5' -54.9 NC_005337.1 + 37860 0.69 0.821631
Target:  5'- uCCAGgagcACGgucuuCUgcgCCACCUCguccUCCGCCg -3'
miRNA:   3'- -GGUC----UGCau---GGa--GGUGGAGa---AGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 123208 0.7 0.765618
Target:  5'- gCCAGGCGggccaggGCUUCguCCUCUgcagacagcugcCCGCCg -3'
miRNA:   3'- -GGUCUGCa------UGGAGguGGAGAa-----------GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 21140 0.7 0.767507
Target:  5'- aCAGcACGUACCgcagcgcgUCCugCUCga-CGCCg -3'
miRNA:   3'- gGUC-UGCAUGG--------AGGugGAGaagGCGG- -5'
25538 5' -54.9 NC_005337.1 + 84173 0.7 0.776881
Target:  5'- aCGG-UGUACUucuccauggagUCCACCUCcUCCGUCg -3'
miRNA:   3'- gGUCuGCAUGG-----------AGGUGGAGaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 110059 0.7 0.776881
Target:  5'- gCCGGGgGcAgCUCCACCUCgacgCgCGCCu -3'
miRNA:   3'- -GGUCUgCaUgGAGGUGGAGaa--G-GCGG- -5'
25538 5' -54.9 NC_005337.1 + 49149 0.7 0.786125
Target:  5'- aCUGGAccaCGUACCUggaCACCUUcuuuacugaauUUCCGCCg -3'
miRNA:   3'- -GGUCU---GCAUGGAg--GUGGAG-----------AAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 50271 0.7 0.786125
Target:  5'- uCCAG-C--ACC-CCGCCUCcucgUCCGCCa -3'
miRNA:   3'- -GGUCuGcaUGGaGGUGGAGa---AGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 133277 0.7 0.786125
Target:  5'- uCCAGGCG-ACgC-CCGCC-C-UCCGCCg -3'
miRNA:   3'- -GGUCUGCaUG-GaGGUGGaGaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 69085 0.69 0.812993
Target:  5'- uCCuGGCGUggaACUaCUACCUCUcCUGCCg -3'
miRNA:   3'- -GGuCUGCA---UGGaGGUGGAGAaGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 46490 0.71 0.748407
Target:  5'- gCAGcCGcGCCUUgGCCUCUaugUCCGCg -3'
miRNA:   3'- gGUCuGCaUGGAGgUGGAGA---AGGCGg -5'
25538 5' -54.9 NC_005337.1 + 94005 0.71 0.728899
Target:  5'- aCCAGACGguggaagGCCUUCACCUgaucgUCgGUCa -3'
miRNA:   3'- -GGUCUGCa------UGGAGGUGGAga---AGgCGG- -5'
25538 5' -54.9 NC_005337.1 + 17077 0.71 0.719015
Target:  5'- aCAGGCGggcgGCaCUCCAgCUCUUCCa-- -3'
miRNA:   3'- gGUCUGCa---UG-GAGGUgGAGAAGGcgg -5'
25538 5' -54.9 NC_005337.1 + 122681 0.76 0.459838
Target:  5'- gCCGGGUGUGCC-CCugCUCgcugCCGCCc -3'
miRNA:   3'- -GGUCUGCAUGGaGGugGAGaa--GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 40388 0.74 0.546655
Target:  5'- gUAGAUGaUGCCcagCCGCUUCaUCCGCCa -3'
miRNA:   3'- gGUCUGC-AUGGa--GGUGGAGaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 79158 0.73 0.586962
Target:  5'- gCCGGACGagggcACCUCCACgauCUCggCCGUCu -3'
miRNA:   3'- -GGUCUGCa----UGGAGGUG---GAGaaGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 92654 0.73 0.586962
Target:  5'- gCCGGGCGUcgcACCaCgGCCUCcUUCGCCa -3'
miRNA:   3'- -GGUCUGCA---UGGaGgUGGAGaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 25649 0.72 0.64825
Target:  5'- aCGGccGCGUcgAUCUCCACCUCggcgCCGCg -3'
miRNA:   3'- gGUC--UGCA--UGGAGGUGGAGaa--GGCGg -5'
25538 5' -54.9 NC_005337.1 + 133337 0.72 0.688953
Target:  5'- gCCAGcAUGU-CCgcgcuccgCCGCCUCgccgCCGCCg -3'
miRNA:   3'- -GGUC-UGCAuGGa-------GGUGGAGaa--GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 86659 0.71 0.709056
Target:  5'- gCAGACGcUugUugUCCGCCUCgaagUCgGCCu -3'
miRNA:   3'- gGUCUGC-AugG--AGGUGGAGa---AGgCGG- -5'
25538 5' -54.9 NC_005337.1 + 10572 0.71 0.719015
Target:  5'- aCGGGCGUGCCcagCCGCCgcaCggcgUCCGUg -3'
miRNA:   3'- gGUCUGCAUGGa--GGUGGa--Ga---AGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.