miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25538 5' -54.9 NC_005337.1 + 71494 0.66 0.946311
Target:  5'- gCCGGACGcggUGCC-CgACUUCgcguuccaCCGCCg -3'
miRNA:   3'- -GGUCUGC---AUGGaGgUGGAGaa------GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 74169 0.66 0.932146
Target:  5'- cUCGGACauGUGCaagUCCGCCUg-UCCGCa -3'
miRNA:   3'- -GGUCUG--CAUGg--AGGUGGAgaAGGCGg -5'
25538 5' -54.9 NC_005337.1 + 114826 0.66 0.932146
Target:  5'- gCAGGCGUACCggcacuaCGCCgaggaCUaccUCCGCg -3'
miRNA:   3'- gGUCUGCAUGGag-----GUGGa----GA---AGGCGg -5'
25538 5' -54.9 NC_005337.1 + 18953 0.66 0.925879
Target:  5'- gCCGGGCGU-CCgagcacgguguaCCACCg--UCCGUCg -3'
miRNA:   3'- -GGUCUGCAuGGa-----------GGUGGagaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 45976 0.66 0.946311
Target:  5'- uCCAGGagcCGcuccGCCUCCAUCUCggccauguccUCCGCg -3'
miRNA:   3'- -GGUCU---GCa---UGGAGGUGGAGa---------AGGCGg -5'
25538 5' -54.9 NC_005337.1 + 93724 0.66 0.937105
Target:  5'- --cGACGcgGCCUCCAgCgac-CCGCCg -3'
miRNA:   3'- gguCUGCa-UGGAGGUgGagaaGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 63759 0.66 0.941826
Target:  5'- aCCGGACGacaACC-CCGCCUacgaggugaUCGCCa -3'
miRNA:   3'- -GGUCUGCa--UGGaGGUGGAgaa------GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 12954 0.66 0.946311
Target:  5'- gCGGACGU-CCUCgACCg--UCaCGUCg -3'
miRNA:   3'- gGUCUGCAuGGAGgUGGagaAG-GCGG- -5'
25538 5' -54.9 NC_005337.1 + 26105 0.66 0.946311
Target:  5'- gCCGGAUGU-CCaCCGCggcgaUC-UCCGCCu -3'
miRNA:   3'- -GGUCUGCAuGGaGGUGg----AGaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 19446 0.66 0.946311
Target:  5'- uCCucGGCGUagugccgguacGCCUgCACCUCcccCUGCCg -3'
miRNA:   3'- -GGu-CUGCA-----------UGGAgGUGGAGaa-GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 83902 0.66 0.926948
Target:  5'- gCCAGGCGcccgUGCCcgggCC-CgUC-UCCGCCg -3'
miRNA:   3'- -GGUCUGC----AUGGa---GGuGgAGaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 93206 0.66 0.941826
Target:  5'- uCCGGAaacucaACCUCaucuaGCCUCUagcacaugCCGCCg -3'
miRNA:   3'- -GGUCUgca---UGGAGg----UGGAGAa-------GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 5538 0.66 0.946311
Target:  5'- uCCAGGC--ACg-CCACCUCUUCCa-- -3'
miRNA:   3'- -GGUCUGcaUGgaGGUGGAGAAGGcgg -5'
25538 5' -54.9 NC_005337.1 + 48712 0.66 0.941365
Target:  5'- aCCAGAaggcguaCGUGCCgggGCUUCUcaCCGCCg -3'
miRNA:   3'- -GGUCU-------GCAUGGaggUGGAGAa-GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 95961 0.66 0.926415
Target:  5'- gCCGG-CGUgucgaucACCUCCACCUUggacacggagUCCcCCa -3'
miRNA:   3'- -GGUCuGCA-------UGGAGGUGGAGa---------AGGcGG- -5'
25538 5' -54.9 NC_005337.1 + 61260 0.66 0.937105
Target:  5'- aCCucGACGgGCCugUCCuuCUUCUUCgCGCCg -3'
miRNA:   3'- -GGu-CUGCaUGG--AGGu-GGAGAAG-GCGG- -5'
25538 5' -54.9 NC_005337.1 + 53724 0.66 0.937105
Target:  5'- aCGGAgcucgUGUACaagauCCUCUUCCGCCc -3'
miRNA:   3'- gGUCU-----GCAUGgagguGGAGAAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 45987 0.66 0.926948
Target:  5'- gCUuGAUGUccGCCUCCACCgacaugUCCGgCa -3'
miRNA:   3'- -GGuCUGCA--UGGAGGUGGaga---AGGCgG- -5'
25538 5' -54.9 NC_005337.1 + 131629 0.66 0.937105
Target:  5'- -gAGGCG-GCCggcgCCACCU--UCCGCUu -3'
miRNA:   3'- ggUCUGCaUGGa---GGUGGAgaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 33921 0.66 0.932146
Target:  5'- uUCAGGCGcccCCgagCGCCUUcacgUCCGCCa -3'
miRNA:   3'- -GGUCUGCau-GGag-GUGGAGa---AGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.