miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25538 5' -54.9 NC_005337.1 + 114253 1.13 0.002231
Target:  5'- uCCAGACGUACCUCCACCUCUUCCGCCc -3'
miRNA:   3'- -GGUCUGCAUGGAGGUGGAGAAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 115179 0.79 0.318739
Target:  5'- gCGGACGccgGCgUCCGCCUCUUCaacuCGCCg -3'
miRNA:   3'- gGUCUGCa--UGgAGGUGGAGAAG----GCGG- -5'
25538 5' -54.9 NC_005337.1 + 51862 0.77 0.423644
Target:  5'- gCAGAUGcugGCCUCCaucuucgccaucGCCUCcUCCGCCc -3'
miRNA:   3'- gGUCUGCa--UGGAGG------------UGGAGaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 50296 0.76 0.459838
Target:  5'- cCCAGACGUGC--CCGCC-CgcgCCGCCg -3'
miRNA:   3'- -GGUCUGCAUGgaGGUGGaGaa-GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 122681 0.76 0.459838
Target:  5'- gCCGGGUGUGCC-CCugCUCgcugCCGCCc -3'
miRNA:   3'- -GGUCUGCAUGGaGGugGAGaa--GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 40924 0.76 0.459838
Target:  5'- cCCAGuCGUccucgACCUCCucgACCUCccgCCGCCg -3'
miRNA:   3'- -GGUCuGCA-----UGGAGG---UGGAGaa-GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 10747 0.76 0.469141
Target:  5'- -gGGACGUGCaCUCgACCUCgagcUCCGCa -3'
miRNA:   3'- ggUCUGCAUG-GAGgUGGAGa---AGGCGg -5'
25538 5' -54.9 NC_005337.1 + 82292 0.75 0.488031
Target:  5'- gUAGugGUGCC-CCGCCg---CCGCCa -3'
miRNA:   3'- gGUCugCAUGGaGGUGGagaaGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 8774 0.74 0.546655
Target:  5'- gCCGcACG-ACCUCCACCUCga-UGCCg -3'
miRNA:   3'- -GGUcUGCaUGGAGGUGGAGaagGCGG- -5'
25538 5' -54.9 NC_005337.1 + 40388 0.74 0.546655
Target:  5'- gUAGAUGaUGCCcagCCGCUUCaUCCGCCa -3'
miRNA:   3'- gGUCUGC-AUGGa--GGUGGAGaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 52120 0.74 0.566717
Target:  5'- aCGGACGUgGCCgCCACCgugugcgCCGCCa -3'
miRNA:   3'- gGUCUGCA-UGGaGGUGGagaa---GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 101503 0.74 0.566717
Target:  5'- gCUGGAUGUGga-CUGCCUCUUCCGCCu -3'
miRNA:   3'- -GGUCUGCAUggaGGUGGAGAAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 92654 0.73 0.586962
Target:  5'- gCCGGGCGUcgcACCaCgGCCUCcUUCGCCa -3'
miRNA:   3'- -GGUCUGCA---UGGaGgUGGAGaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 79158 0.73 0.586962
Target:  5'- gCCGGACGagggcACCUCCACgauCUCggCCGUCu -3'
miRNA:   3'- -GGUCUGCa----UGGAGGUG---GAGaaGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 37767 0.73 0.638021
Target:  5'- cCCGGACGcGCCUCCccuGCCUaucgUUCCcagGCCa -3'
miRNA:   3'- -GGUCUGCaUGGAGG---UGGAg---AAGG---CGG- -5'
25538 5' -54.9 NC_005337.1 + 25649 0.72 0.64825
Target:  5'- aCGGccGCGUcgAUCUCCACCUCggcgCCGCg -3'
miRNA:   3'- gGUC--UGCA--UGGAGGUGGAGaa--GGCGg -5'
25538 5' -54.9 NC_005337.1 + 50186 0.72 0.678826
Target:  5'- uCCGGACG-GCCgcaaC-CCUCUggcUCCGCCg -3'
miRNA:   3'- -GGUCUGCaUGGag--GuGGAGA---AGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 133337 0.72 0.688953
Target:  5'- gCCAGcAUGU-CCgcgcuccgCCGCCUCgccgCCGCCg -3'
miRNA:   3'- -GGUC-UGCAuGGa-------GGUGGAGaa--GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 133337 0.72 0.688953
Target:  5'- gCCAGcAUGU-CCgcgcuccgCCGCCUCgccgCCGCCg -3'
miRNA:   3'- -GGUC-UGCAuGGa-------GGUGGAGaa--GGCGG- -5'
25538 5' -54.9 NC_005337.1 + 45495 0.71 0.699033
Target:  5'- uCCGGACGcacgucgaagGCCUCCACgUCggugUCggCGCCg -3'
miRNA:   3'- -GGUCUGCa---------UGGAGGUGgAGa---AG--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.