miRNA display CGI


Results 21 - 40 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25539 3' -57.7 NC_005337.1 + 13392 0.66 0.770756
Target:  5'- uGGGCACCguGCgGGCGGAgcgauggagcuuuuUGCGGuCGAGc -3'
miRNA:   3'- -CUCGUGG--CGgUCGCCU--------------ACGUC-GUUCu -5'
25539 3' -57.7 NC_005337.1 + 14420 0.68 0.684171
Target:  5'- -cGCGCCGCCAGgagacaCGuGcgGCAGUAGGu -3'
miRNA:   3'- cuCGUGGCGGUC------GC-CuaCGUCGUUCu -5'
25539 3' -57.7 NC_005337.1 + 14837 0.66 0.801427
Target:  5'- uGGGCGuccuuuCCGCCgAGCGG-UGCuggcgcgacgGGCGAGAc -3'
miRNA:   3'- -CUCGU------GGCGG-UCGCCuACG----------UCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 17600 0.7 0.560323
Target:  5'- -cGC-CCGCgGGCGGcUGCAGCAc-- -3'
miRNA:   3'- cuCGuGGCGgUCGCCuACGUCGUucu -5'
25539 3' -57.7 NC_005337.1 + 19060 0.72 0.443363
Target:  5'- gGAGCugUGCC-GCGGccacagcagGUGCGGCGAGu -3'
miRNA:   3'- -CUCGugGCGGuCGCC---------UACGUCGUUCu -5'
25539 3' -57.7 NC_005337.1 + 21490 0.7 0.539054
Target:  5'- -uGCGCCGCCAcguggcugagcucGCGGA-GCcGCAGGGc -3'
miRNA:   3'- cuCGUGGCGGU-------------CGCCUaCGuCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 23729 0.71 0.461963
Target:  5'- uGAcCGCCGCC-GCGGAgcgGCAGCA-GAa -3'
miRNA:   3'- -CUcGUGGCGGuCGCCUa--CGUCGUuCU- -5'
25539 3' -57.7 NC_005337.1 + 24516 0.71 0.471415
Target:  5'- cGAGCccguGCCcaaGCCGGCGGAgaUGC-GCGAGAu -3'
miRNA:   3'- -CUCG----UGG---CGGUCGCCU--ACGuCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 25097 0.66 0.764061
Target:  5'- cGAGCuCCGCCcGCGcGgcGCGGCGcgcgcGGAc -3'
miRNA:   3'- -CUCGuGGCGGuCGC-CuaCGUCGU-----UCU- -5'
25539 3' -57.7 NC_005337.1 + 25721 0.66 0.773606
Target:  5'- -cGCGCCGCCAGCGucagGCGcGCGc-- -3'
miRNA:   3'- cuCGUGGCGGUCGCcua-CGU-CGUucu -5'
25539 3' -57.7 NC_005337.1 + 26098 0.66 0.792299
Target:  5'- aAGCGCCGCCGGauGuccaccGCGGCGAu- -3'
miRNA:   3'- cUCGUGGCGGUCgcCua----CGUCGUUcu -5'
25539 3' -57.7 NC_005337.1 + 29973 0.66 0.782087
Target:  5'- aGAGCGCCGCCGcgcccucGCGGAccGCccGCGcGAa -3'
miRNA:   3'- -CUCGUGGCGGU-------CGCCUa-CGu-CGUuCU- -5'
25539 3' -57.7 NC_005337.1 + 31040 0.71 0.480965
Target:  5'- cGGGCGCgCaCCAGCGGcagguUGCAGCGGGc -3'
miRNA:   3'- -CUCGUG-GcGGUCGCCu----ACGUCGUUCu -5'
25539 3' -57.7 NC_005337.1 + 31256 0.73 0.365262
Target:  5'- cGGCuCCGgCAGCGGAUGCGGUgcgccaGGGAg -3'
miRNA:   3'- cUCGuGGCgGUCGCCUACGUCG------UUCU- -5'
25539 3' -57.7 NC_005337.1 + 32090 0.66 0.792299
Target:  5'- cGGUACCGCgCGG-GGAUGaCGuGCGAGGc -3'
miRNA:   3'- cUCGUGGCG-GUCgCCUAC-GU-CGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 33412 0.68 0.684171
Target:  5'- uGGCgGCCGCC-GUGGAUGguGCGc-- -3'
miRNA:   3'- cUCG-UGGCGGuCGCCUACguCGUucu -5'
25539 3' -57.7 NC_005337.1 + 34314 0.67 0.724772
Target:  5'- ---uGCCGCUAGCGGAggaucgagGaCAGCAGGu -3'
miRNA:   3'- cucgUGGCGGUCGCCUa-------C-GUCGUUCu -5'
25539 3' -57.7 NC_005337.1 + 34373 0.66 0.777389
Target:  5'- gGAGCGCCGCCgcggcgagccagaggAGCGuggcGGUGCuccagGGCAGGc -3'
miRNA:   3'- -CUCGUGGCGG---------------UCGC----CUACG-----UCGUUCu -5'
25539 3' -57.7 NC_005337.1 + 35517 0.71 0.461963
Target:  5'- cGGCGCUGCCGGUGacgaGGUGCAGgGAGu -3'
miRNA:   3'- cUCGUGGCGGUCGC----CUACGUCgUUCu -5'
25539 3' -57.7 NC_005337.1 + 35563 0.82 0.102295
Target:  5'- aGGGCGCCGCgCgAGCGGAUGCcuAGCGAGGc -3'
miRNA:   3'- -CUCGUGGCG-G-UCGCCUACG--UCGUUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.