miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25539 3' -57.7 NC_005337.1 + 869 0.69 0.58079
Target:  5'- cGGGCGCgGCCgGGCGGAagaGCgcgccgAGCAGGAg -3'
miRNA:   3'- -CUCGUGgCGG-UCGCCUa--CG------UCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 869 0.69 0.58079
Target:  5'- cGGGCGCgGCCgGGCGGAagaGCgcgccgAGCAGGAg -3'
miRNA:   3'- -CUCGUGgCGG-UCGCCUa--CG------UCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 908 0.77 0.233579
Target:  5'- cGAGCGCgacgaGCgCGGCGGcgGCGGCGAGGc -3'
miRNA:   3'- -CUCGUGg----CG-GUCGCCuaCGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 908 0.77 0.233579
Target:  5'- cGAGCGCgacgaGCgCGGCGGcgGCGGCGAGGc -3'
miRNA:   3'- -CUCGUGg----CG-GUCGCCuaCGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 1051 0.66 0.773606
Target:  5'- cGGGCGgCgggagGCCGGCGGggGCGgacuGCGGGAc -3'
miRNA:   3'- -CUCGUgG-----CGGUCGCCuaCGU----CGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 1051 0.66 0.773606
Target:  5'- cGGGCGgCgggagGCCGGCGGggGCGgacuGCGGGAc -3'
miRNA:   3'- -CUCGUgG-----CGGUCGCCuaCGU----CGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 1108 0.7 0.570534
Target:  5'- cAGCGCCGCCGcCGGGaGCAGCc--- -3'
miRNA:   3'- cUCGUGGCGGUcGCCUaCGUCGuucu -5'
25539 3' -57.7 NC_005337.1 + 1108 0.7 0.570534
Target:  5'- cAGCGCCGCCGcCGGGaGCAGCc--- -3'
miRNA:   3'- cUCGUGGCGGUcGCCUaCGUCGuucu -5'
25539 3' -57.7 NC_005337.1 + 1158 0.72 0.452611
Target:  5'- gGAGCG-CGCCGGCGGA-GCGGCccgcuAGGc -3'
miRNA:   3'- -CUCGUgGCGGUCGCCUaCGUCGu----UCU- -5'
25539 3' -57.7 NC_005337.1 + 3598 0.66 0.754395
Target:  5'- cAGCGCCcCCAGCGGc-GUAGCGccguAGAc -3'
miRNA:   3'- cUCGUGGcGGUCGCCuaCGUCGU----UCU- -5'
25539 3' -57.7 NC_005337.1 + 4489 0.71 0.490608
Target:  5'- -uGCAUCGCCAGCacGUGCAGCGGc- -3'
miRNA:   3'- cuCGUGGCGGUCGccUACGUCGUUcu -5'
25539 3' -57.7 NC_005337.1 + 5020 0.72 0.424296
Target:  5'- cGAGCA-CGUCGGCGuugagcacguacaGAUGCAGCGGGGu -3'
miRNA:   3'- -CUCGUgGCGGUCGC-------------CUACGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 5584 0.67 0.744619
Target:  5'- -cGCGUCGCCAGCGcGcGUGCccGGCGGGGg -3'
miRNA:   3'- cuCGUGGCGGUCGC-C-UACG--UCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 5881 0.71 0.48964
Target:  5'- aGAGCgGCCGCCAGCauGGAcucgucgUGUcGCGAGAu -3'
miRNA:   3'- -CUCG-UGGCGGUCG--CCU-------ACGuCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 6856 0.66 0.754395
Target:  5'- cGGCACgguCGCCAG-GuGGUGCAGCAGc- -3'
miRNA:   3'- cUCGUG---GCGGUCgC-CUACGUCGUUcu -5'
25539 3' -57.7 NC_005337.1 + 6973 0.68 0.636639
Target:  5'- cAGCACgGCCAGCGGGUGaCgccgugcuuguccauGGCGcGGAc -3'
miRNA:   3'- cUCGUGgCGGUCGCCUAC-G---------------UCGU-UCU- -5'
25539 3' -57.7 NC_005337.1 + 8456 0.67 0.744619
Target:  5'- --uCACCGCCGaUGuGcgGCAGCAGGAa -3'
miRNA:   3'- cucGUGGCGGUcGC-CuaCGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 10261 0.66 0.801427
Target:  5'- gGGGCGCCuCCAuCGGcgGCGGCGc-- -3'
miRNA:   3'- -CUCGUGGcGGUcGCCuaCGUCGUucu -5'
25539 3' -57.7 NC_005337.1 + 10670 0.66 0.798705
Target:  5'- -cGCGCCgGCCGGCGGcggguucuccucgaAgGCGGcCAGGAg -3'
miRNA:   3'- cuCGUGG-CGGUCGCC--------------UaCGUC-GUUCU- -5'
25539 3' -57.7 NC_005337.1 + 10974 0.68 0.684171
Target:  5'- cGGCGgauCCGCgCAGCGcGUGCGGCAcGGAc -3'
miRNA:   3'- cUCGU---GGCG-GUCGCcUACGUCGU-UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.