miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25539 3' -57.7 NC_005337.1 + 91216 0.69 0.611756
Target:  5'- -cGCGCCGCCGGUGGu--CAGCGc-- -3'
miRNA:   3'- cuCGUGGCGGUCGCCuacGUCGUucu -5'
25539 3' -57.7 NC_005337.1 + 130786 0.71 0.490608
Target:  5'- uGGGCGCCGCCGguGCGGcUGCuGCGc-- -3'
miRNA:   3'- -CUCGUGGCGGU--CGCCuACGuCGUucu -5'
25539 3' -57.7 NC_005337.1 + 97011 0.71 0.510156
Target:  5'- -uGCACCugGCguGCGGGUuCGGCAAGAc -3'
miRNA:   3'- cuCGUGG--CGguCGCCUAcGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 80379 0.71 0.514105
Target:  5'- --cCACCGCCAGCGGGgccgccccgacgcgcUGCuugcagaaccAGCAGGAg -3'
miRNA:   3'- cucGUGGCGGUCGCCU---------------ACG----------UCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 59192 0.7 0.520051
Target:  5'- gGGGCACCGgcgaCGGCuGGAUGguGCA-GAa -3'
miRNA:   3'- -CUCGUGGCg---GUCG-CCUACguCGUuCU- -5'
25539 3' -57.7 NC_005337.1 + 17600 0.7 0.560323
Target:  5'- -cGC-CCGCgGGCGGcUGCAGCAc-- -3'
miRNA:   3'- cuCGuGGCGgUCGCCuACGUCGUucu -5'
25539 3' -57.7 NC_005337.1 + 68245 0.7 0.570534
Target:  5'- gGAGCGCgGCCGGCGcGUG-GGCGAGc -3'
miRNA:   3'- -CUCGUGgCGGUCGCcUACgUCGUUCu -5'
25539 3' -57.7 NC_005337.1 + 1108 0.7 0.570534
Target:  5'- cAGCGCCGCCGcCGGGaGCAGCc--- -3'
miRNA:   3'- cUCGUGGCGGUcGCCUaCGUCGuucu -5'
25539 3' -57.7 NC_005337.1 + 869 0.69 0.58079
Target:  5'- cGGGCGCgGCCgGGCGGAagaGCgcgccgAGCAGGAg -3'
miRNA:   3'- -CUCGUGgCGG-UCGCCUa--CG------UCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 31040 0.71 0.480965
Target:  5'- cGGGCGCgCaCCAGCGGcagguUGCAGCGGGc -3'
miRNA:   3'- -CUCGUG-GcGGUCGCCu----ACGUCGUUCu -5'
25539 3' -57.7 NC_005337.1 + 77400 0.72 0.452611
Target:  5'- cGGCGCCGCgggaGGUGGAUGUgcgggcccAGCGAGGc -3'
miRNA:   3'- cUCGUGGCGg---UCGCCUACG--------UCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 1158 0.72 0.452611
Target:  5'- gGAGCG-CGCCGGCGGA-GCGGCccgcuAGGc -3'
miRNA:   3'- -CUCGUgGCGGUCGCCUaCGUCGu----UCU- -5'
25539 3' -57.7 NC_005337.1 + 37948 0.78 0.186494
Target:  5'- cAGCGCCGCCAGCGGGa--GGCAGGu -3'
miRNA:   3'- cUCGUGGCGGUCGCCUacgUCGUUCu -5'
25539 3' -57.7 NC_005337.1 + 104715 0.77 0.22789
Target:  5'- cGAGgGCCGCCGccGCGGcgGCGGCAucaAGAu -3'
miRNA:   3'- -CUCgUGGCGGU--CGCCuaCGUCGU---UCU- -5'
25539 3' -57.7 NC_005337.1 + 908 0.77 0.233579
Target:  5'- cGAGCGCgacgaGCgCGGCGGcgGCGGCGAGGc -3'
miRNA:   3'- -CUCGUGg----CG-GUCGCCuaCGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 31256 0.73 0.365262
Target:  5'- cGGCuCCGgCAGCGGAUGCGGUgcgccaGGGAg -3'
miRNA:   3'- cUCGuGGCgGUCGCCUACGUCG------UUCU- -5'
25539 3' -57.7 NC_005337.1 + 75789 0.73 0.365262
Target:  5'- cAGCugCGCUcGCGGAgcuccgucaGCAGCGAGAc -3'
miRNA:   3'- cUCGugGCGGuCGCCUa--------CGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 99411 0.73 0.373459
Target:  5'- -cGCACCGCgGGCGGcgGguGCGugcuGAg -3'
miRNA:   3'- cuCGUGGCGgUCGCCuaCguCGUu---CU- -5'
25539 3' -57.7 NC_005337.1 + 74938 0.73 0.381781
Target:  5'- -cGCGCgGCCGcGCGGAUGCGGUgcuGGGg -3'
miRNA:   3'- cuCGUGgCGGU-CGCCUACGUCGu--UCU- -5'
25539 3' -57.7 NC_005337.1 + 56866 0.72 0.416276
Target:  5'- -uGCACCGCCAGCGcAUG--GCGAGAa -3'
miRNA:   3'- cuCGUGGCGGUCGCcUACguCGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.