miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25539 3' -57.7 NC_005337.1 + 113932 1.08 0.001527
Target:  5'- uGAGCACCGCCAGCGGAUGCAGCAAGAa -3'
miRNA:   3'- -CUCGUGGCGGUCGCCUACGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 35563 0.82 0.102295
Target:  5'- aGGGCGCCGCgCgAGCGGAUGCcuAGCGAGGc -3'
miRNA:   3'- -CUCGUGGCG-G-UCGCCUACG--UCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 56125 0.79 0.177236
Target:  5'- cGGCAUCGCCAGCGuGcgcggcGUGCAGCGGGGc -3'
miRNA:   3'- cUCGUGGCGGUCGC-C------UACGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 37948 0.78 0.186494
Target:  5'- cAGCGCCGCCAGCGGGa--GGCAGGu -3'
miRNA:   3'- cUCGUGGCGGUCGCCUacgUCGUUCu -5'
25539 3' -57.7 NC_005337.1 + 104715 0.77 0.22789
Target:  5'- cGAGgGCCGCCGccGCGGcgGCGGCAucaAGAu -3'
miRNA:   3'- -CUCgUGGCGGU--CGCCuaCGUCGU---UCU- -5'
25539 3' -57.7 NC_005337.1 + 908 0.77 0.233579
Target:  5'- cGAGCGCgacgaGCgCGGCGGcgGCGGCGAGGc -3'
miRNA:   3'- -CUCGUGg----CG-GUCGCCuaCGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 908 0.77 0.233579
Target:  5'- cGAGCGCgacgaGCgCGGCGGcgGCGGCGAGGc -3'
miRNA:   3'- -CUCGUGg----CG-GUCGCCuaCGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 60756 0.75 0.304244
Target:  5'- cGAGUGCCGCCucGCGGGUGCccAGCAc-- -3'
miRNA:   3'- -CUCGUGGCGGu-CGCCUACG--UCGUucu -5'
25539 3' -57.7 NC_005337.1 + 97784 0.74 0.317996
Target:  5'- cGAGCGCCGCgGccGCGGccaggccGUGCGGCAGGu -3'
miRNA:   3'- -CUCGUGGCGgU--CGCC-------UACGUCGUUCu -5'
25539 3' -57.7 NC_005337.1 + 31256 0.73 0.365262
Target:  5'- cGGCuCCGgCAGCGGAUGCGGUgcgccaGGGAg -3'
miRNA:   3'- cUCGuGGCgGUCGCCUACGUCG------UUCU- -5'
25539 3' -57.7 NC_005337.1 + 75789 0.73 0.365262
Target:  5'- cAGCugCGCUcGCGGAgcuccgucaGCAGCGAGAc -3'
miRNA:   3'- cUCGugGCGGuCGCCUa--------CGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 99411 0.73 0.373459
Target:  5'- -cGCACCGCgGGCGGcgGguGCGugcuGAg -3'
miRNA:   3'- cuCGUGGCGgUCGCCuaCguCGUu---CU- -5'
25539 3' -57.7 NC_005337.1 + 74938 0.73 0.381781
Target:  5'- -cGCGCgGCCGcGCGGAUGCGGUgcuGGGg -3'
miRNA:   3'- cuCGUGgCGGU-CGCCUACGUCGu--UCU- -5'
25539 3' -57.7 NC_005337.1 + 94779 0.73 0.381781
Target:  5'- cAGCACCGCCGGUcGAUcgGCGGCGuAGAc -3'
miRNA:   3'- cUCGUGGCGGUCGcCUA--CGUCGU-UCU- -5'
25539 3' -57.7 NC_005337.1 + 56866 0.72 0.416276
Target:  5'- -uGCACCGCCAGCGcAUG--GCGAGAa -3'
miRNA:   3'- cuCGUGGCGGUCGCcUACguCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 5020 0.72 0.424296
Target:  5'- cGAGCA-CGUCGGCGuugagcacguacaGAUGCAGCGGGGu -3'
miRNA:   3'- -CUCGUgGCGGUCGC-------------CUACGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 19060 0.72 0.443363
Target:  5'- gGAGCugUGCC-GCGGccacagcagGUGCGGCGAGu -3'
miRNA:   3'- -CUCGugGCGGuCGCC---------UACGUCGUUCu -5'
25539 3' -57.7 NC_005337.1 + 77400 0.72 0.452611
Target:  5'- cGGCGCCGCgggaGGUGGAUGUgcgggcccAGCGAGGc -3'
miRNA:   3'- cUCGUGGCGg---UCGCCUACG--------UCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 1158 0.72 0.452611
Target:  5'- gGAGCG-CGCCGGCGGA-GCGGCccgcuAGGc -3'
miRNA:   3'- -CUCGUgGCGGUCGCCUaCGUCGu----UCU- -5'
25539 3' -57.7 NC_005337.1 + 35517 0.71 0.461963
Target:  5'- cGGCGCUGCCGGUGacgaGGUGCAGgGAGu -3'
miRNA:   3'- cUCGUGGCGGUCGC----CUACGUCgUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.