Results 1 - 20 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25539 | 3' | -57.7 | NC_005337.1 | + | 10670 | 0.66 | 0.798705 |
Target: 5'- -cGCGCCgGCCGGCGGcggguucuccucgaAgGCGGcCAGGAg -3' miRNA: 3'- cuCGUGG-CGGUCGCC--------------UaCGUC-GUUCU- -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 44295 | 0.66 | 0.754395 |
Target: 5'- gGAGCACCGacgaguCCuGCGuGA-GCAGCAAcGAg -3' miRNA: 3'- -CUCGUGGC------GGuCGC-CUaCGUCGUU-CU- -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 99884 | 0.66 | 0.751473 |
Target: 5'- gGAGCACCGCCAcgcuccucuggcucGCcGcgGCGGCGc-- -3' miRNA: 3'- -CUCGUGGCGGU--------------CGcCuaCGUCGUucu -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 110546 | 0.66 | 0.792299 |
Target: 5'- -uGCuGCCGCUccGCGGcgGCGGuCAGGAu -3' miRNA: 3'- cuCG-UGGCGGu-CGCCuaCGUC-GUUCU- -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 26098 | 0.66 | 0.792299 |
Target: 5'- aAGCGCCGCCGGauGuccaccGCGGCGAu- -3' miRNA: 3'- cUCGUGGCGGUCgcCua----CGUCGUUcu -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 123670 | 0.66 | 0.792299 |
Target: 5'- uGGCGCCGCC-GCucccccGCGGCGGGAc -3' miRNA: 3'- cUCGUGGCGGuCGccua--CGUCGUUCU- -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 57139 | 0.66 | 0.783022 |
Target: 5'- -cGCGCUGCuCGGCGGcgGCAcGCccgucGGAa -3' miRNA: 3'- cuCGUGGCG-GUCGCCuaCGU-CGu----UCU- -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 120210 | 0.66 | 0.792299 |
Target: 5'- cGAGCACCucGCCgaGGCGGA--CAGCAu-- -3' miRNA: 3'- -CUCGUGG--CGG--UCGCCUacGUCGUucu -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 3598 | 0.66 | 0.754395 |
Target: 5'- cAGCGCCcCCAGCGGc-GUAGCGccguAGAc -3' miRNA: 3'- cUCGUGGcGGUCGCCuaCGUCGU----UCU- -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 14837 | 0.66 | 0.801427 |
Target: 5'- uGGGCGuccuuuCCGCCgAGCGG-UGCuggcgcgacgGGCGAGAc -3' miRNA: 3'- -CUCGU------GGCGG-UCGCCuACG----------UCGUUCU- -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 128757 | 0.66 | 0.801427 |
Target: 5'- aGAGCuCCGCCGGCGcgcGAaccugGUAGCAcGGg -3' miRNA: 3'- -CUCGuGGCGGUCGC---CUa----CGUCGUuCU- -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 29973 | 0.66 | 0.782087 |
Target: 5'- aGAGCGCCGCCGcgcccucGCGGAccGCccGCGcGAa -3' miRNA: 3'- -CUCGUGGCGGU-------CGCCUa-CGu-CGUuCU- -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 82549 | 0.66 | 0.764061 |
Target: 5'- cAGCGCCGCaAGuUGGuGUGCAGCAcGGc -3' miRNA: 3'- cUCGUGGCGgUC-GCC-UACGUCGUuCU- -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 1051 | 0.66 | 0.773606 |
Target: 5'- cGGGCGgCgggagGCCGGCGGggGCGgacuGCGGGAc -3' miRNA: 3'- -CUCGUgG-----CGGUCGCCuaCGU----CGUUCU- -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 25721 | 0.66 | 0.773606 |
Target: 5'- -cGCGCCGCCAGCGucagGCGcGCGc-- -3' miRNA: 3'- cuCGUGGCGGUCGCcua-CGU-CGUucu -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 34373 | 0.66 | 0.777389 |
Target: 5'- gGAGCGCCGCCgcggcgagccagaggAGCGuggcGGUGCuccagGGCAGGc -3' miRNA: 3'- -CUCGUGGCGG---------------UCGC----CUACG-----UCGUUCu -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 64143 | 0.66 | 0.773606 |
Target: 5'- aAGCACCuGUCccuGaCGGAggGCGGCGAGGa -3' miRNA: 3'- cUCGUGG-CGGu--C-GCCUa-CGUCGUUCU- -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 83224 | 0.66 | 0.773606 |
Target: 5'- uGAGCACguUGCCGGUGGAgcuaggacugcUGgAGCcGGAg -3' miRNA: 3'- -CUCGUG--GCGGUCGCCU-----------ACgUCGuUCU- -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 43267 | 0.66 | 0.754395 |
Target: 5'- cGAGCGCCGCCAGCauccgGCuGGUAAc- -3' miRNA: 3'- -CUCGUGGCGGUCGccua-CG-UCGUUcu -5' |
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25539 | 3' | -57.7 | NC_005337.1 | + | 35963 | 0.66 | 0.773606 |
Target: 5'- cGGC-UCGCgCAGCGGAUGUcgacgccggagGGCAGGu -3' miRNA: 3'- cUCGuGGCG-GUCGCCUACG-----------UCGUUCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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