Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25540 | 3' | -64.1 | NC_005337.1 | + | 113601 | 1.11 | 0.00037 |
Target: 5'- cGACGGGUGCCCGCCCCUCUGGUCCGCg -3' miRNA: 3'- -CUGCCCACGGGCGGGGAGACCAGGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 53770 | 0.74 | 0.175084 |
Target: 5'- -uCGGcGUGCCCGCCCC-C-GG-CCGCg -3' miRNA: 3'- cuGCC-CACGGGCGGGGaGaCCaGGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 51745 | 0.74 | 0.179336 |
Target: 5'- cGGCaGGcUGCCCGCCCUggcgCUGGacggCCGCc -3' miRNA: 3'- -CUGcCC-ACGGGCGGGGa---GACCa---GGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 104527 | 0.73 | 0.188116 |
Target: 5'- -uCGaGGaGCCCGgCCCgCUGGUCCGCc -3' miRNA: 3'- cuGC-CCaCGGGCgGGGaGACCAGGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 10185 | 0.73 | 0.211732 |
Target: 5'- uGAuCGGGUGcCCCGUCCacaucCUGGUCgGCa -3' miRNA: 3'- -CU-GCCCAC-GGGCGGGga---GACCAGgCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 120350 | 0.72 | 0.227624 |
Target: 5'- cGACGGGgcugcGCCCGCCCaCgacccgacgaugacgCUGGUCCcCg -3' miRNA: 3'- -CUGCCCa----CGGGCGGG-Ga--------------GACCAGGcG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 110735 | 0.71 | 0.254791 |
Target: 5'- cGCGGG-GCagGCCCCgccggGGUCCGCg -3' miRNA: 3'- cUGCCCaCGggCGGGGaga--CCAGGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 16997 | 0.71 | 0.278895 |
Target: 5'- cGCGGGacCCCGCCgaCUCgucggGGUCUGCg -3' miRNA: 3'- cUGCCCacGGGCGGg-GAGa----CCAGGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 50898 | 0.71 | 0.285198 |
Target: 5'- uGGCGGGcGCgCGCgCCCagcggCcGGUCCGCa -3' miRNA: 3'- -CUGCCCaCGgGCG-GGGa----GaCCAGGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 99871 | 0.7 | 0.309495 |
Target: 5'- -uCGGGccUGCCCuggagcaccgccacGCUCCUCUGGcucgCCGCg -3' miRNA: 3'- cuGCCC--ACGGG--------------CGGGGAGACCa---GGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 33208 | 0.7 | 0.311532 |
Target: 5'- cGGCGGG-GCgCGCCUCUCagagGaGUUCGCg -3' miRNA: 3'- -CUGCCCaCGgGCGGGGAGa---C-CAGGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 98528 | 0.68 | 0.401309 |
Target: 5'- cGGgGGGaGCCCGCCCgaC-GG-CCGCg -3' miRNA: 3'- -CUgCCCaCGGGCGGGgaGaCCaGGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 132513 | 0.68 | 0.417792 |
Target: 5'- cGGCGGGaUG-CCGCCCUggUC-GGUCCuGCu -3' miRNA: 3'- -CUGCCC-ACgGGCGGGG--AGaCCAGG-CG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 124448 | 0.68 | 0.426187 |
Target: 5'- uGCGGG-GCCUGCCCCaugcaCUcaUCCGCc -3' miRNA: 3'- cUGCCCaCGGGCGGGGa----GAccAGGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 123402 | 0.68 | 0.434681 |
Target: 5'- cACGuGGUGCUCGCCCgCUC-GGcgagcgagcUCUGCa -3' miRNA: 3'- cUGC-CCACGGGCGGG-GAGaCC---------AGGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 105173 | 0.68 | 0.434681 |
Target: 5'- cACGGcGUGgUCGaCCCCUgCUucgcggGGUCCGCg -3' miRNA: 3'- cUGCC-CACgGGC-GGGGA-GA------CCAGGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 122682 | 0.67 | 0.440685 |
Target: 5'- -cCGGGUGUgccccugcucgcugCCGCCCgagguggUGGUCCGCg -3' miRNA: 3'- cuGCCCACG--------------GGCGGGgag----ACCAGGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 25159 | 0.67 | 0.451958 |
Target: 5'- gGACGcGGUGUCCGCgCUCUguguggccCUGGccucggCCGCg -3' miRNA: 3'- -CUGC-CCACGGGCG-GGGA--------GACCa-----GGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 39428 | 0.67 | 0.451958 |
Target: 5'- cGCGGGcGCCCGCUcgggCCgcgCUcGGUgCGCa -3' miRNA: 3'- cUGCCCaCGGGCGG----GGa--GA-CCAgGCG- -5' |
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25540 | 3' | -64.1 | NC_005337.1 | + | 85364 | 0.67 | 0.451958 |
Target: 5'- gGACGcGGUGCCCGUguuuaugaacUCCaggugcguggUCUGG-CCGCc -3' miRNA: 3'- -CUGC-CCACGGGCG----------GGG----------AGACCaGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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