miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25540 3' -64.1 NC_005337.1 + 51745 0.74 0.179336
Target:  5'- cGGCaGGcUGCCCGCCCUggcgCUGGacggCCGCc -3'
miRNA:   3'- -CUGcCC-ACGGGCGGGGa---GACCa---GGCG- -5'
25540 3' -64.1 NC_005337.1 + 76405 0.66 0.543357
Target:  5'- cGCGGGgcgcuggcGCCCGUCCUccUUGGUCaGCg -3'
miRNA:   3'- cUGCCCa-------CGGGCGGGGa-GACCAGgCG- -5'
25540 3' -64.1 NC_005337.1 + 120440 0.66 0.515171
Target:  5'- cGGCGGacUGCgCGCCCCacaUGGUCCu- -3'
miRNA:   3'- -CUGCCc-ACGgGCGGGGag-ACCAGGcg -5'
25540 3' -64.1 NC_005337.1 + 17299 0.66 0.515171
Target:  5'- --aGGauGUGCCCGCCCUcCUcGUCCuGCa -3'
miRNA:   3'- cugCC--CACGGGCGGGGaGAcCAGG-CG- -5'
25540 3' -64.1 NC_005337.1 + 23546 0.66 0.505906
Target:  5'- cGGCGGG-GCCUGCCCCgc--GUacaCGCc -3'
miRNA:   3'- -CUGCCCaCGGGCGGGGagacCAg--GCG- -5'
25540 3' -64.1 NC_005337.1 + 122682 0.67 0.440685
Target:  5'- -cCGGGUGUgccccugcucgcugCCGCCCgagguggUGGUCCGCg -3'
miRNA:   3'- cuGCCCACG--------------GGCGGGgag----ACCAGGCG- -5'
25540 3' -64.1 NC_005337.1 + 123402 0.68 0.434681
Target:  5'- cACGuGGUGCUCGCCCgCUC-GGcgagcgagcUCUGCa -3'
miRNA:   3'- cUGC-CCACGGGCGGG-GAGaCC---------AGGCG- -5'
25540 3' -64.1 NC_005337.1 + 132513 0.68 0.417792
Target:  5'- cGGCGGGaUG-CCGCCCUggUC-GGUCCuGCu -3'
miRNA:   3'- -CUGCCC-ACgGGCGGGG--AGaCCAGG-CG- -5'
25540 3' -64.1 NC_005337.1 + 33208 0.7 0.311532
Target:  5'- cGGCGGG-GCgCGCCUCUCagagGaGUUCGCg -3'
miRNA:   3'- -CUGCCCaCGgGCGGGGAGa---C-CAGGCG- -5'
25540 3' -64.1 NC_005337.1 + 16997 0.71 0.278895
Target:  5'- cGCGGGacCCCGCCgaCUCgucggGGUCUGCg -3'
miRNA:   3'- cUGCCCacGGGCGGg-GAGa----CCAGGCG- -5'
25540 3' -64.1 NC_005337.1 + 124448 0.68 0.426187
Target:  5'- uGCGGG-GCCUGCCCCaugcaCUcaUCCGCc -3'
miRNA:   3'- cUGCCCaCGGGCGGGGa----GAccAGGCG- -5'
25540 3' -64.1 NC_005337.1 + 98528 0.68 0.401309
Target:  5'- cGGgGGGaGCCCGCCCgaC-GG-CCGCg -3'
miRNA:   3'- -CUgCCCaCGGGCGGGgaGaCCaGGCG- -5'
25540 3' -64.1 NC_005337.1 + 99871 0.7 0.309495
Target:  5'- -uCGGGccUGCCCuggagcaccgccacGCUCCUCUGGcucgCCGCg -3'
miRNA:   3'- cuGCCC--ACGGG--------------CGGGGAGACCa---GGCG- -5'
25540 3' -64.1 NC_005337.1 + 50898 0.71 0.285198
Target:  5'- uGGCGGGcGCgCGCgCCCagcggCcGGUCCGCa -3'
miRNA:   3'- -CUGCCCaCGgGCG-GGGa----GaCCAGGCG- -5'
25540 3' -64.1 NC_005337.1 + 110735 0.71 0.254791
Target:  5'- cGCGGG-GCagGCCCCgccggGGUCCGCg -3'
miRNA:   3'- cUGCCCaCGggCGGGGaga--CCAGGCG- -5'
25540 3' -64.1 NC_005337.1 + 120350 0.72 0.227624
Target:  5'- cGACGGGgcugcGCCCGCCCaCgacccgacgaugacgCUGGUCCcCg -3'
miRNA:   3'- -CUGCCCa----CGGGCGGG-Ga--------------GACCAGGcG- -5'
25540 3' -64.1 NC_005337.1 + 10185 0.73 0.211732
Target:  5'- uGAuCGGGUGcCCCGUCCacaucCUGGUCgGCa -3'
miRNA:   3'- -CU-GCCCAC-GGGCGGGga---GACCAGgCG- -5'
25540 3' -64.1 NC_005337.1 + 104527 0.73 0.188116
Target:  5'- -uCGaGGaGCCCGgCCCgCUGGUCCGCc -3'
miRNA:   3'- cuGC-CCaCGGGCgGGGaGACCAGGCG- -5'
25540 3' -64.1 NC_005337.1 + 53770 0.74 0.175084
Target:  5'- -uCGGcGUGCCCGCCCC-C-GG-CCGCg -3'
miRNA:   3'- cuGCC-CACGGGCGGGGaGaCCaGGCG- -5'
25540 3' -64.1 NC_005337.1 + 45316 0.66 0.543357
Target:  5'- -cCGGGaccgcGCCCuCCgCCUCcgcgcGGUCCGCg -3'
miRNA:   3'- cuGCCCa----CGGGcGG-GGAGa----CCAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.