miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25541 3' -53.5 NC_005337.1 + 113229 1.07 0.005433
Target:  5'- gUACUUCAACGUCCUGGACGAGGAGCAc -3'
miRNA:   3'- -AUGAAGUUGCAGGACCUGCUCCUCGU- -5'
25541 3' -53.5 NC_005337.1 + 57531 0.72 0.67244
Target:  5'- -cCUUCAACGUUCUGGuCaAGGAGUg -3'
miRNA:   3'- auGAAGUUGCAGGACCuGcUCCUCGu -5'
25541 3' -53.5 NC_005337.1 + 4335 0.72 0.682938
Target:  5'- ---gUCGGCGcCCUGGACGAuGAGCu -3'
miRNA:   3'- augaAGUUGCaGGACCUGCUcCUCGu -5'
25541 3' -53.5 NC_005337.1 + 92595 0.72 0.707933
Target:  5'- gUGCUUCGACGaCgUGGACGuccgcgccuucgccaAGGAGCu -3'
miRNA:   3'- -AUGAAGUUGCaGgACCUGC---------------UCCUCGu -5'
25541 3' -53.5 NC_005337.1 + 7455 0.71 0.714125
Target:  5'- cACgUCGGCGUCCgugGcGACGAGGGcGCGc -3'
miRNA:   3'- aUGaAGUUGCAGGa--C-CUGCUCCU-CGU- -5'
25541 3' -53.5 NC_005337.1 + 25020 0.71 0.744639
Target:  5'- cGCUUCGACGUgCgcgcggcGGAcacCGAGGAGCu -3'
miRNA:   3'- aUGAAGUUGCAgGa------CCU---GCUCCUCGu -5'
25541 3' -53.5 NC_005337.1 + 37693 0.71 0.764472
Target:  5'- gGCggCGGCGUCCaGGACGccGAGCu -3'
miRNA:   3'- aUGaaGUUGCAGGaCCUGCucCUCGu -5'
25541 3' -53.5 NC_005337.1 + 39041 0.71 0.764472
Target:  5'- cGCUUCGACaccguuGUCgUGGACGAGauccacGAGCAc -3'
miRNA:   3'- aUGAAGUUG------CAGgACCUGCUC------CUCGU- -5'
25541 3' -53.5 NC_005337.1 + 115511 0.7 0.793254
Target:  5'- cGCgaggUCGACGaCCUGGAgGAGG-GCu -3'
miRNA:   3'- aUGa---AGUUGCaGGACCUgCUCCuCGu -5'
25541 3' -53.5 NC_005337.1 + 97274 0.69 0.820639
Target:  5'- cGCUUCGACGUgCUGGugcucgACGAGucGCAc -3'
miRNA:   3'- aUGAAGUUGCAgGACC------UGCUCcuCGU- -5'
25541 3' -53.5 NC_005337.1 + 123894 0.69 0.829412
Target:  5'- -uCUUCAu--UCCggaGGGCGAGGAGCGg -3'
miRNA:   3'- auGAAGUugcAGGa--CCUGCUCCUCGU- -5'
25541 3' -53.5 NC_005337.1 + 92673 0.69 0.837995
Target:  5'- cUGCUUCGACGugcucaccuUCCUGGGCG-GcGGCGa -3'
miRNA:   3'- -AUGAAGUUGC---------AGGACCUGCuCcUCGU- -5'
25541 3' -53.5 NC_005337.1 + 106985 0.69 0.837995
Target:  5'- aGCUUCuGCGUCgUGGACaAGGcgGGCGc -3'
miRNA:   3'- aUGAAGuUGCAGgACCUGcUCC--UCGU- -5'
25541 3' -53.5 NC_005337.1 + 94701 0.69 0.846376
Target:  5'- aUAC-UCGGCGUCCacgaGGACGAGuacccGAGCGc -3'
miRNA:   3'- -AUGaAGUUGCAGGa---CCUGCUC-----CUCGU- -5'
25541 3' -53.5 NC_005337.1 + 66184 0.69 0.846376
Target:  5'- cACcgCcGCGUCCgggGcGACGGGGAGCu -3'
miRNA:   3'- aUGaaGuUGCAGGa--C-CUGCUCCUCGu -5'
25541 3' -53.5 NC_005337.1 + 25959 0.69 0.85455
Target:  5'- gUACUUCGcccgcGCGUCCaGGA--AGGAGCGc -3'
miRNA:   3'- -AUGAAGU-----UGCAGGaCCUgcUCCUCGU- -5'
25541 3' -53.5 NC_005337.1 + 114439 0.68 0.892061
Target:  5'- ----aCGACGUCC-GGcucauCGAGGAGCGg -3'
miRNA:   3'- augaaGUUGCAGGaCCu----GCUCCUCGU- -5'
25541 3' -53.5 NC_005337.1 + 47588 0.68 0.898852
Target:  5'- gUACUUCAACGagggCCUGGAggccgacuuCGAGGcggacaacaAGCGu -3'
miRNA:   3'- -AUGAAGUUGCa---GGACCU---------GCUCC---------UCGU- -5'
25541 3' -53.5 NC_005337.1 + 43471 0.67 0.905394
Target:  5'- gGgUUCAGCGUCCUGauGACGAuGGcGUAc -3'
miRNA:   3'- aUgAAGUUGCAGGAC--CUGCU-CCuCGU- -5'
25541 3' -53.5 NC_005337.1 + 86465 0.67 0.905394
Target:  5'- cACgUCGugcACGaucUCCUGGAUGAGGAuGCGc -3'
miRNA:   3'- aUGaAGU---UGC---AGGACCUGCUCCU-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.