Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 4335 | 0.72 | 0.682938 |
Target: 5'- ---gUCGGCGcCCUGGACGAuGAGCu -3' miRNA: 3'- augaAGUUGCaGGACCUGCUcCUCGu -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 6246 | 0.66 | 0.952874 |
Target: 5'- cGCgagUCAGCGUCgCUGacgcuggcgccGGCGuccAGGAGCAg -3' miRNA: 3'- aUGa--AGUUGCAG-GAC-----------CUGC---UCCUCGU- -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 7455 | 0.71 | 0.714125 |
Target: 5'- cACgUCGGCGUCCgugGcGACGAGGGcGCGc -3' miRNA: 3'- aUGaAGUUGCAGGa--C-CUGCUCCU-CGU- -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 8577 | 0.66 | 0.939331 |
Target: 5'- gACgUCGACGuUCCUGGACuucAGGAagGCGa -3' miRNA: 3'- aUGaAGUUGC-AGGACCUGc--UCCU--CGU- -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 9352 | 0.67 | 0.929039 |
Target: 5'- cUGCUgUCGGgGUCCagGGGC-AGGGGCAu -3' miRNA: 3'- -AUGA-AGUUgCAGGa-CCUGcUCCUCGU- -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 25020 | 0.71 | 0.744639 |
Target: 5'- cGCUUCGACGUgCgcgcggcGGAcacCGAGGAGCu -3' miRNA: 3'- aUGAAGUUGCAgGa------CCU---GCUCCUCGu -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 25959 | 0.69 | 0.85455 |
Target: 5'- gUACUUCGcccgcGCGUCCaGGA--AGGAGCGc -3' miRNA: 3'- -AUGAAGU-----UGCAGGaCCUgcUCCUCGU- -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 37693 | 0.71 | 0.764472 |
Target: 5'- gGCggCGGCGUCCaGGACGccGAGCu -3' miRNA: 3'- aUGaaGUUGCAGGaCCUGCucCUCGu -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 38314 | 0.66 | 0.93635 |
Target: 5'- cGCgcgUCGagcgcaacgaccgacGCGUCuggCUGGACGuGGAGCGc -3' miRNA: 3'- aUGa--AGU---------------UGCAG---GACCUGCuCCUCGU- -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 39041 | 0.71 | 0.764472 |
Target: 5'- cGCUUCGACaccguuGUCgUGGACGAGauccacGAGCAc -3' miRNA: 3'- aUGAAGUUG------CAGgACCUGCUC------CUCGU- -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 43471 | 0.67 | 0.905394 |
Target: 5'- gGgUUCAGCGUCCUGauGACGAuGGcGUAc -3' miRNA: 3'- aUgAAGUUGCAGGAC--CUGCU-CCuCGU- -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 47467 | 0.67 | 0.928498 |
Target: 5'- -cCUUCAA-GUCCUGcgucuacGACGAGGAGg- -3' miRNA: 3'- auGAAGUUgCAGGAC-------CUGCUCCUCgu -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 47588 | 0.68 | 0.898852 |
Target: 5'- gUACUUCAACGagggCCUGGAggccgacuuCGAGGcggacaacaAGCGu -3' miRNA: 3'- -AUGAAGUUGCa---GGACCU---------GCUCC---------UCGU- -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 51835 | 0.66 | 0.944095 |
Target: 5'- gUGCUcguccaUC-AUGUCC--GACGAGGAGCAg -3' miRNA: 3'- -AUGA------AGuUGCAGGacCUGCUCCUCGU- -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 54504 | 0.66 | 0.944095 |
Target: 5'- -uCUgggaGACGUCC-GG-CGAGGAGCu -3' miRNA: 3'- auGAag--UUGCAGGaCCuGCUCCUCGu -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 57531 | 0.72 | 0.67244 |
Target: 5'- -cCUUCAACGUUCUGGuCaAGGAGUg -3' miRNA: 3'- auGAAGUUGCAGGACCuGcUCCUCGu -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 64128 | 0.66 | 0.944095 |
Target: 5'- cGCggcgCAugGCGUCCUGGAaGGGGAuGUAc -3' miRNA: 3'- aUGaa--GU--UGCAGGACCUgCUCCU-CGU- -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 66184 | 0.69 | 0.846376 |
Target: 5'- cACcgCcGCGUCCgggGcGACGGGGAGCu -3' miRNA: 3'- aUGaaGuUGCAGGa--C-CUGCUCCUCGu -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 70471 | 0.66 | 0.944095 |
Target: 5'- gGCUgaaCAAC-UCCUGGcgcuucagcaGCGAGGAGUc -3' miRNA: 3'- aUGAa--GUUGcAGGACC----------UGCUCCUCGu -5' |
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25541 | 3' | -53.5 | NC_005337.1 | + | 84567 | 0.67 | 0.92351 |
Target: 5'- cGCggCAGCGcgugaCCgcgagGGugGAGGAGCu -3' miRNA: 3'- aUGaaGUUGCa----GGa----CCugCUCCUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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