Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25541 | 5' | -58.7 | NC_005337.1 | + | 1790 | 0.76 | 0.243433 |
Target: 5'- gCCaGUCCCUCCUGCCGccGCAcgGGAACc -3' miRNA: 3'- -GGaCGGGGAGGACGGCcuCGU--UCUUG- -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 1890 | 0.68 | 0.651269 |
Target: 5'- gCCgggGCCgguacgaCUCCgcgUGCUGGuGCAGGAGCg -3' miRNA: 3'- -GGa--CGGg------GAGG---ACGGCCuCGUUCUUG- -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 5708 | 0.67 | 0.711712 |
Target: 5'- -gUGCUUgaCCgccagGCCGGAGCGGGGAg -3' miRNA: 3'- ggACGGGgaGGa----CGGCCUCGUUCUUg -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 8989 | 0.67 | 0.691738 |
Target: 5'- aCCgcacCUCCUCCgUGCCGGGGCugcAGcGCa -3' miRNA: 3'- -GGac--GGGGAGG-ACGGCCUCGu--UCuUG- -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 13940 | 0.66 | 0.750783 |
Target: 5'- --aGCCCCgUCgUGCUccauGGGCGAGGGCg -3' miRNA: 3'- ggaCGGGG-AGgACGGc---CUCGUUCUUG- -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 15899 | 0.69 | 0.590263 |
Target: 5'- gCUGCCCCagCagggcGCCGGAGgcAGAGCg -3' miRNA: 3'- gGACGGGGagGa----CGGCCUCguUCUUG- -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 16705 | 0.67 | 0.670555 |
Target: 5'- --gGCCUC-CgCUGCCGGgugacgcgucaguAGCAGGAACa -3' miRNA: 3'- ggaCGGGGaG-GACGGCC-------------UCGUUCUUG- -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 19467 | 0.68 | 0.610555 |
Target: 5'- gCCUGCaccuCCC-CCUGCCGGAuGCGuucGAugGCg -3' miRNA: 3'- -GGACG----GGGaGGACGGCCU-CGUu--CU--UG- -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 23892 | 0.66 | 0.764098 |
Target: 5'- gCCUGCCuCCUCCgccugucgcUGCCGcGcgcccgcgcgcccgcGGCAGGcGCg -3' miRNA: 3'- -GGACGG-GGAGG---------ACGGC-C---------------UCGUUCuUG- -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 28612 | 0.66 | 0.742116 |
Target: 5'- aCgaGCUCCUCCaggauggugagcacgGuCCGGAGCAcGAGCc -3' miRNA: 3'- -GgaCGGGGAGGa--------------C-GGCCUCGUuCUUG- -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 30037 | 0.66 | 0.760316 |
Target: 5'- aCCgUGCCCUUCUgGCUGGuGCGcgugguGAACu -3' miRNA: 3'- -GG-ACGGGGAGGaCGGCCuCGUu-----CUUG- -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 32831 | 0.66 | 0.741148 |
Target: 5'- --cGCCCCUCCUcGgUGGAGCGc---- -3' miRNA: 3'- ggaCGGGGAGGA-CgGCCUCGUucuug -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 40190 | 0.67 | 0.691738 |
Target: 5'- aCC-GCCCCUCgggUGcCCGGccGCAGGGACc -3' miRNA: 3'- -GGaCGGGGAGg--AC-GGCCu-CGUUCUUG- -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 41839 | 0.78 | 0.195428 |
Target: 5'- uCCgGCUCCUCCUcGUCGG-GCGGGAGCg -3' miRNA: 3'- -GGaCGGGGAGGA-CGGCCuCGUUCUUG- -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 47495 | 0.7 | 0.523456 |
Target: 5'- aCCUGCCgCCgcccgugcggacgCCggagauggccaucgUGCCGGAGCGGGAc- -3' miRNA: 3'- -GGACGG-GGa------------GG--------------ACGGCCUCGUUCUug -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 51939 | 0.66 | 0.757468 |
Target: 5'- uCCUGgaCUUCCUGUuggcgguggugcugCGGGGCAAGGAg -3' miRNA: 3'- -GGACggGGAGGACG--------------GCCUCGUUCUUg -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 65643 | 0.71 | 0.445143 |
Target: 5'- uCC-GCCCCUCCgccacGCUGGAGUucGAGg -3' miRNA: 3'- -GGaCGGGGAGGa----CGGCCUCGuuCUUg -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 69100 | 0.75 | 0.280622 |
Target: 5'- aCUaCCUCUCCUGCCGGgagGGCGAGAc- -3' miRNA: 3'- gGAcGGGGAGGACGGCC---UCGUUCUug -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 71789 | 0.66 | 0.750783 |
Target: 5'- gCC-GCCCCgcCCgagGUCGGAGCGcauGAAUa -3' miRNA: 3'- -GGaCGGGGa-GGa--CGGCCUCGUu--CUUG- -5' |
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25541 | 5' | -58.7 | NC_005337.1 | + | 74814 | 0.77 | 0.205325 |
Target: 5'- aCCUGCgCCuCUCCaGCgCGGAGguGGAGCg -3' miRNA: 3'- -GGACG-GG-GAGGaCG-GCCUCguUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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