miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25541 5' -58.7 NC_005337.1 + 75537 0.8 0.144428
Target:  5'- --aGCCCCUCCgUGCCGcuuAGCGAGAACa -3'
miRNA:   3'- ggaCGGGGAGG-ACGGCc--UCGUUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 1890 0.68 0.651269
Target:  5'- gCCgggGCCgguacgaCUCCgcgUGCUGGuGCAGGAGCg -3'
miRNA:   3'- -GGa--CGGg------GAGG---ACGGCCuCGUUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 86345 0.68 0.66143
Target:  5'- gCCgGCCuCCUCCgcaacgacCCGGGGCAcggucuugugcgGGAACa -3'
miRNA:   3'- -GGaCGG-GGAGGac------GGCCUCGU------------UCUUG- -5'
25541 5' -58.7 NC_005337.1 + 16705 0.67 0.670555
Target:  5'- --gGCCUC-CgCUGCCGGgugacgcgucaguAGCAGGAACa -3'
miRNA:   3'- ggaCGGGGaG-GACGGCC-------------UCGUUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 5708 0.67 0.711712
Target:  5'- -gUGCUUgaCCgccagGCCGGAGCGGGGAg -3'
miRNA:   3'- ggACGGGgaGGa----CGGCCUCGUUCUUg -5'
25541 5' -58.7 NC_005337.1 + 28612 0.66 0.742116
Target:  5'- aCgaGCUCCUCCaggauggugagcacgGuCCGGAGCAcGAGCc -3'
miRNA:   3'- -GgaCGGGGAGGa--------------C-GGCCUCGUuCUUG- -5'
25541 5' -58.7 NC_005337.1 + 13940 0.66 0.750783
Target:  5'- --aGCCCCgUCgUGCUccauGGGCGAGGGCg -3'
miRNA:   3'- ggaCGGGG-AGgACGGc---CUCGUUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 71789 0.66 0.750783
Target:  5'- gCC-GCCCCgcCCgagGUCGGAGCGcauGAAUa -3'
miRNA:   3'- -GGaCGGGGa-GGa--CGGCCUCGUu--CUUG- -5'
25541 5' -58.7 NC_005337.1 + 51939 0.66 0.757468
Target:  5'- uCCUGgaCUUCCUGUuggcgguggugcugCGGGGCAAGGAg -3'
miRNA:   3'- -GGACggGGAGGACG--------------GCCUCGUUCUUg -5'
25541 5' -58.7 NC_005337.1 + 102989 0.68 0.651269
Target:  5'- uUCUGCCCCUCggacgUGCCcGAGCGcggcccgcagguGGGGCu -3'
miRNA:   3'- -GGACGGGGAGg----ACGGcCUCGU------------UCUUG- -5'
25541 5' -58.7 NC_005337.1 + 124032 0.68 0.634984
Target:  5'- --cGCCCCgcgaaggccgcgcgCCUGCCGcGGCuGGAGCu -3'
miRNA:   3'- ggaCGGGGa-------------GGACGGCcUCGuUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 118372 0.77 0.205325
Target:  5'- cUCUGCCuCCggcgcCCUGCUGGGGCAgcGGAACc -3'
miRNA:   3'- -GGACGG-GGa----GGACGGCCUCGU--UCUUG- -5'
25541 5' -58.7 NC_005337.1 + 74814 0.77 0.205325
Target:  5'- aCCUGCgCCuCUCCaGCgCGGAGguGGAGCg -3'
miRNA:   3'- -GGACG-GG-GAGGaCG-GCCUCguUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 69100 0.75 0.280622
Target:  5'- aCUaCCUCUCCUGCCGGgagGGCGAGAc- -3'
miRNA:   3'- gGAcGGGGAGGACGGCC---UCGUUCUug -5'
25541 5' -58.7 NC_005337.1 + 65643 0.71 0.445143
Target:  5'- uCC-GCCCCUCCgccacGCUGGAGUucGAGg -3'
miRNA:   3'- -GGaCGGGGAGGa----CGGCCUCGuuCUUg -5'
25541 5' -58.7 NC_005337.1 + 74873 0.7 0.520526
Target:  5'- gCCUGCUCUUCCUgcGCCcGAcCGAGGACg -3'
miRNA:   3'- -GGACGGGGAGGA--CGGcCUcGUUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 47495 0.7 0.523456
Target:  5'- aCCUGCCgCCgcccgugcggacgCCggagauggccaucgUGCCGGAGCGGGAc- -3'
miRNA:   3'- -GGACGG-GGa------------GG--------------ACGGCCUCGUUCUug -5'
25541 5' -58.7 NC_005337.1 + 103672 0.69 0.570092
Target:  5'- --gGCCaUCUCCUGCCuGAGCGcGGACc -3'
miRNA:   3'- ggaCGG-GGAGGACGGcCUCGUuCUUG- -5'
25541 5' -58.7 NC_005337.1 + 19467 0.68 0.610555
Target:  5'- gCCUGCaccuCCC-CCUGCCGGAuGCGuucGAugGCg -3'
miRNA:   3'- -GGACG----GGGaGGACGGCCU-CGUu--CU--UG- -5'
25541 5' -58.7 NC_005337.1 + 23892 0.66 0.764098
Target:  5'- gCCUGCCuCCUCCgccugucgcUGCCGcGcgcccgcgcgcccgcGGCAGGcGCg -3'
miRNA:   3'- -GGACGG-GGAGG---------ACGGC-C---------------UCGUUCuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.