miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25542 5' -62.5 NC_005337.1 + 9715 0.66 0.603889
Target:  5'- gACGCGG-CCU-CGCGCaGCGGGgaggagagCCu -3'
miRNA:   3'- aUGCGCCuGGAcGCGCG-CGUCCa-------GGc -5'
25542 5' -62.5 NC_005337.1 + 58369 0.66 0.603889
Target:  5'- -uCGCGGACUU-CGCGCGCAacGUCgGc -3'
miRNA:   3'- auGCGCCUGGAcGCGCGCGUc-CAGgC- -5'
25542 5' -62.5 NC_005337.1 + 43834 0.66 0.603889
Target:  5'- cUGCaGCGGGCCgGCgGCGCGguGGa--- -3'
miRNA:   3'- -AUG-CGCCUGGaCG-CGCGCguCCaggc -5'
25542 5' -62.5 NC_005337.1 + 7059 0.66 0.603889
Target:  5'- gGCgGCGGGgUUGCGCGCGUAgacgugcagcgcGGUCa- -3'
miRNA:   3'- aUG-CGCCUgGACGCGCGCGU------------CCAGgc -5'
25542 5' -62.5 NC_005337.1 + 46370 0.66 0.603889
Target:  5'- gGCGCaGGcgcGCCaGCGCGUcaGcCAGGUCCu -3'
miRNA:   3'- aUGCG-CC---UGGaCGCGCG--C-GUCCAGGc -5'
25542 5' -62.5 NC_005337.1 + 18717 0.66 0.603889
Target:  5'- gGCGaGGAgCUGCgGCGCGCuGGcgCCu -3'
miRNA:   3'- aUGCgCCUgGACG-CGCGCGuCCa-GGc -5'
25542 5' -62.5 NC_005337.1 + 86968 0.66 0.603889
Target:  5'- gACGaaGACCUcGCGCGCGUcGGaCCu -3'
miRNA:   3'- aUGCgcCUGGA-CGCGCGCGuCCaGGc -5'
25542 5' -62.5 NC_005337.1 + 38845 0.66 0.602901
Target:  5'- gUACGCcGGCCUGUGCGCcaagcacauggacGCGcGGUUCu -3'
miRNA:   3'- -AUGCGcCUGGACGCGCG-------------CGU-CCAGGc -5'
25542 5' -62.5 NC_005337.1 + 118208 0.66 0.600925
Target:  5'- gGCGCGGAgCCgcccgacgucaucaUGCaGUGCGCGGaGcCCGa -3'
miRNA:   3'- aUGCGCCU-GG--------------ACG-CGCGCGUC-CaGGC- -5'
25542 5' -62.5 NC_005337.1 + 96988 0.66 0.597962
Target:  5'- cGgGCGGugcgucuacgucacCCUGCaccugGCGUGCGGGUUCGg -3'
miRNA:   3'- aUgCGCCu-------------GGACG-----CGCGCGUCCAGGC- -5'
25542 5' -62.5 NC_005337.1 + 127684 0.66 0.594015
Target:  5'- gGCGCcGACCUG-GCGCcGguGG-CCGc -3'
miRNA:   3'- aUGCGcCUGGACgCGCG-CguCCaGGC- -5'
25542 5' -62.5 NC_005337.1 + 99503 0.66 0.594015
Target:  5'- cUACGCGGACugccuggugcuCUGCGaCGaCGC-GGcCCGg -3'
miRNA:   3'- -AUGCGCCUG-----------GACGC-GC-GCGuCCaGGC- -5'
25542 5' -62.5 NC_005337.1 + 105218 0.66 0.594015
Target:  5'- -cCGCuGAgCUGCGCGCucGCGGGcgcCCGg -3'
miRNA:   3'- auGCGcCUgGACGCGCG--CGUCCa--GGC- -5'
25542 5' -62.5 NC_005337.1 + 64349 0.66 0.594015
Target:  5'- -cCGCGGcgguacacaGCCguguccaGCGCGCGCAGGagCa -3'
miRNA:   3'- auGCGCC---------UGGa------CGCGCGCGUCCagGc -5'
25542 5' -62.5 NC_005337.1 + 111080 0.66 0.594015
Target:  5'- -cCGCGGGCgUGagGUGCGCcAGG-CCGu -3'
miRNA:   3'- auGCGCCUGgACg-CGCGCG-UCCaGGC- -5'
25542 5' -62.5 NC_005337.1 + 31274 0.66 0.594015
Target:  5'- -cUGCGGGCC-GCGCucGgGCAcGUCCGa -3'
miRNA:   3'- auGCGCCUGGaCGCG--CgCGUcCAGGC- -5'
25542 5' -62.5 NC_005337.1 + 28488 0.66 0.594015
Target:  5'- gAUGCGG-CC-GCGCgGCGCGcGGUCgCGc -3'
miRNA:   3'- aUGCGCCuGGaCGCG-CGCGU-CCAG-GC- -5'
25542 5' -62.5 NC_005337.1 + 5809 0.66 0.594015
Target:  5'- cACGCGG-UCUcC-CGCGCcGGUCCGg -3'
miRNA:   3'- aUGCGCCuGGAcGcGCGCGuCCAGGC- -5'
25542 5' -62.5 NC_005337.1 + 103124 0.66 0.584168
Target:  5'- -gUGCGGcAUCgUGCGCGCGCucuacAGcGUCCa -3'
miRNA:   3'- auGCGCC-UGG-ACGCGCGCG-----UC-CAGGc -5'
25542 5' -62.5 NC_005337.1 + 109389 0.66 0.584168
Target:  5'- cGCGCGGGUCUG-GCGUGCc-GUCCa -3'
miRNA:   3'- aUGCGCCUGGACgCGCGCGucCAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.