miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25552 5' -57.3 NC_005337.1 + 34414 0.67 0.769173
Target:  5'- -cAGGGCaGGCccgaccGCCUGGCGGGCGg -3'
miRNA:   3'- guUCCUG-CUGcagu--CGGACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 41207 0.67 0.787732
Target:  5'- aGAGGuCGGCGcUUAGCCc-GCGGACc -3'
miRNA:   3'- gUUCCuGCUGC-AGUCGGacCGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 41600 0.72 0.489905
Target:  5'- gCGAGGGCGugGUCguggcgaaggaGGCCgUGGUGcGACGc -3'
miRNA:   3'- -GUUCCUGCugCAG-----------UCGG-ACCGC-CUGU- -5'
25552 5' -57.3 NC_005337.1 + 42126 0.67 0.796806
Target:  5'- aCGAGGACGGCGcUGGCCc-GCGGcGCGu -3'
miRNA:   3'- -GUUCCUGCUGCaGUCGGacCGCC-UGU- -5'
25552 5' -57.3 NC_005337.1 + 42961 0.77 0.259633
Target:  5'- aGGGGAcCGugGcCAGCCUGGCGG-CGu -3'
miRNA:   3'- gUUCCU-GCugCaGUCGGACCGCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 42970 0.68 0.750126
Target:  5'- aCGAGGACGGCGcggCgacgGGCCagacguugaacuUGGCGGAgAg -3'
miRNA:   3'- -GUUCCUGCUGCa--G----UCGG------------ACCGCCUgU- -5'
25552 5' -57.3 NC_005337.1 + 44112 0.66 0.813631
Target:  5'- gCAGGGAucagcguCGGCGUCgAGuCCgugcGGCGGAUg -3'
miRNA:   3'- -GUUCCU-------GCUGCAG-UC-GGa---CCGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 44367 0.68 0.704868
Target:  5'- -uGGGGCGACGccccgCcgcccaccgggauggGGCCugUGGCGGACAu -3'
miRNA:   3'- guUCCUGCUGCa----G---------------UCGG--ACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 47881 0.67 0.796806
Target:  5'- --cGGACGcGCG-CAgccGCCUGGCGG-CAu -3'
miRNA:   3'- guuCCUGC-UGCaGU---CGGACCGCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 48395 0.7 0.613342
Target:  5'- gGAGGGCucCGUguGCCcgaucgcgcccgacaUGGCGGACGc -3'
miRNA:   3'- gUUCCUGcuGCAguCGG---------------ACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 50397 0.67 0.805732
Target:  5'- gCGGGGGCGcgccgcGCGUCGGUgaCggagcGGCGGGCGc -3'
miRNA:   3'- -GUUCCUGC------UGCAGUCG--Ga----CCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 52577 0.79 0.198613
Target:  5'- gCGGGGACGGCGcggCGGCgCUGGCGGcCAa -3'
miRNA:   3'- -GUUCCUGCUGCa--GUCG-GACCGCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 53038 0.66 0.823104
Target:  5'- -cGGGAgcugcCGGCGcaaCGGCCUGGUcucGGACAc -3'
miRNA:   3'- guUCCU-----GCUGCa--GUCGGACCG---CCUGU- -5'
25552 5' -57.3 NC_005337.1 + 54183 0.66 0.817962
Target:  5'- cCAGGGAauaaaugaauaacucCGugGUgAGCCUcGUGGGCGc -3'
miRNA:   3'- -GUUCCU---------------GCugCAgUCGGAcCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 66565 0.66 0.848639
Target:  5'- gGAGGACGACGgguccgagauagacgCccaggagacGGCCUGGUGGcugACGg -3'
miRNA:   3'- gUUCCUGCUGCa--------------G---------UCGGACCGCC---UGU- -5'
25552 5' -57.3 NC_005337.1 + 68272 0.68 0.710863
Target:  5'- uCGAGGAcuuCGACGUCugcGGCCggccGGCGG-CGu -3'
miRNA:   3'- -GUUCCU---GCUGCAG---UCGGa---CCGCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 69026 0.66 0.814501
Target:  5'- gAAGGACucCGUCuccgaggcgAGCCgcagGGCGGugGc -3'
miRNA:   3'- gUUCCUGcuGCAG---------UCGGa---CCGCCugU- -5'
25552 5' -57.3 NC_005337.1 + 71728 0.69 0.650142
Target:  5'- -cAGGugcgcgacgacGCGACgGUCAGCCUgucGGUGGGCGa -3'
miRNA:   3'- guUCC-----------UGCUG-CAGUCGGA---CCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 82517 0.73 0.461677
Target:  5'- -cGGGGCGGcCGUCcagcGCCagGGCGGGCAg -3'
miRNA:   3'- guUCCUGCU-GCAGu---CGGa-CCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 82616 0.69 0.639922
Target:  5'- cCAGGGGCGACGgcgGGCgCUGGCGaccGCGg -3'
miRNA:   3'- -GUUCCUGCUGCag-UCG-GACCGCc--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.