miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25552 5' -57.3 NC_005337.1 + 852 0.66 0.819683
Target:  5'- gAAGG-CGGCGggcagcgcgggcgCGGCCgGGCGGAa- -3'
miRNA:   3'- gUUCCuGCUGCa------------GUCGGaCCGCCUgu -5'
25552 5' -57.3 NC_005337.1 + 852 0.66 0.819683
Target:  5'- gAAGG-CGGCGggcagcgcgggcgCGGCCgGGCGGAa- -3'
miRNA:   3'- gUUCCuGCUGCa------------GUCGGaCCGCCUgu -5'
25552 5' -57.3 NC_005337.1 + 1001 0.68 0.740443
Target:  5'- gGAGGGCgGGCGUC-GCCUGGaGGcCGu -3'
miRNA:   3'- gUUCCUG-CUGCAGuCGGACCgCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 1001 0.68 0.740443
Target:  5'- gGAGGGCgGGCGUC-GCCUGGaGGcCGu -3'
miRNA:   3'- gUUCCUG-CUGCAGuCGGACCgCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 1051 0.74 0.407945
Target:  5'- --cGGGCGGCGggaGGCCggcgggGGCGGACu -3'
miRNA:   3'- guuCCUGCUGCag-UCGGa-----CCGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 1051 0.74 0.407945
Target:  5'- --cGGGCGGCGggaGGCCggcgggGGCGGACu -3'
miRNA:   3'- guuCCUGCUGCag-UCGGa-----CCGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 1371 0.72 0.470993
Target:  5'- uGAGGACGGCGgugUCGGCCaGGCaGAUg -3'
miRNA:   3'- gUUCCUGCUGC---AGUCGGaCCGcCUGu -5'
25552 5' -57.3 NC_005337.1 + 2724 0.71 0.538622
Target:  5'- aCGAGcgcGACGACGUCcGCCgguaGCGGGCAc -3'
miRNA:   3'- -GUUC---CUGCUGCAGuCGGac--CGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 7147 0.66 0.823104
Target:  5'- --cGGACGAUGUCcGCCU--CGGACc -3'
miRNA:   3'- guuCCUGCUGCAGuCGGAccGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 9798 0.66 0.814501
Target:  5'- -cAGGGCGGCGUUcaccauGUCcagGGCGGAUg -3'
miRNA:   3'- guUCCUGCUGCAGu-----CGGa--CCGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 11019 0.66 0.847844
Target:  5'- cCGAGGGCucCGUgaugaacaugUGGCC-GGCGGGCAg -3'
miRNA:   3'- -GUUCCUGcuGCA----------GUCGGaCCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 11956 0.69 0.660348
Target:  5'- gAGGGACGcgcauaucGCGUCAGC--GGgGGACAg -3'
miRNA:   3'- gUUCCUGC--------UGCAGUCGgaCCgCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 13283 0.7 0.619472
Target:  5'- cCGAGGGCGAUGcgCAGgagGGCGGGCu -3'
miRNA:   3'- -GUUCCUGCUGCa-GUCggaCCGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 13902 0.67 0.786817
Target:  5'- aCGGGGACcaGCGUCaucgucgGGUCgugGGCGGGCGc -3'
miRNA:   3'- -GUUCCUGc-UGCAG-------UCGGa--CCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 20960 0.67 0.787732
Target:  5'- uCAAGGGCGGC-UC-GUC-GGCGGACc -3'
miRNA:   3'- -GUUCCUGCUGcAGuCGGaCCGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 23719 0.74 0.382587
Target:  5'- uCAAGGGCGAgaccuucgacaCGgcaaaacaCAGCCUGGUGGGCGc -3'
miRNA:   3'- -GUUCCUGCU-----------GCa-------GUCGGACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 24857 0.7 0.609257
Target:  5'- uCGAGGACGugGUCGcgcacGCCgugucuGUGGACGg -3'
miRNA:   3'- -GUUCCUGCugCAGU-----CGGac----CGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 25707 0.69 0.650142
Target:  5'- gGAGGAgCGAcuCGUCAGCCUucUGGACAa -3'
miRNA:   3'- gUUCCU-GCU--GCAGUCGGAccGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 31501 0.68 0.730665
Target:  5'- --cGGGCGugGUCAGCac-GUGGAUg -3'
miRNA:   3'- guuCCUGCugCAGUCGgacCGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 32099 0.69 0.650142
Target:  5'- gCGGGGAUGACGU--GCgaGGCGGAg- -3'
miRNA:   3'- -GUUCCUGCUGCAguCGgaCCGCCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.