miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25552 5' -57.3 NC_005337.1 + 107730 1.08 0.002316
Target:  5'- gCAAGGACGACGUCAGCCUGGCGGACAu -3'
miRNA:   3'- -GUUCCUGCUGCAGUCGGACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 52577 0.79 0.198613
Target:  5'- gCGGGGACGGCGcggCGGCgCUGGCGGcCAa -3'
miRNA:   3'- -GUUCCUGCUGCa--GUCG-GACCGCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 42961 0.77 0.259633
Target:  5'- aGGGGAcCGugGcCAGCCUGGCGG-CGu -3'
miRNA:   3'- gUUCCU-GCugCaGUCGGACCGCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 108626 0.76 0.298948
Target:  5'- cCGAGGuggagauCGACG-CGGCCgUGGCGGGCGa -3'
miRNA:   3'- -GUUCCu------GCUGCaGUCGG-ACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 122349 0.74 0.382587
Target:  5'- -cGGGACGACGUCGGCaacCUGcUGGGCAg -3'
miRNA:   3'- guUCCUGCUGCAGUCG---GACcGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 23719 0.74 0.382587
Target:  5'- uCAAGGGCGAgaccuucgacaCGgcaaaacaCAGCCUGGUGGGCGc -3'
miRNA:   3'- -GUUCCUGCU-----------GCa-------GUCGGACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 110340 0.74 0.390922
Target:  5'- --cGGGCGGCGUCGcgcgcGCCUGccGCGGGCGc -3'
miRNA:   3'- guuCCUGCUGCAGU-----CGGAC--CGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 1051 0.74 0.407945
Target:  5'- --cGGGCGGCGggaGGCCggcgggGGCGGACu -3'
miRNA:   3'- guuCCUGCUGCag-UCGGa-----CCGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 1051 0.74 0.407945
Target:  5'- --cGGGCGGCGggaGGCCggcgggGGCGGACu -3'
miRNA:   3'- guuCCUGCUGCag-UCGGa-----CCGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 95259 0.73 0.415755
Target:  5'- --cGGAUGGCGuucagggUCAGCCggugGGUGGACAu -3'
miRNA:   3'- guuCCUGCUGC-------AGUCGGa---CCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 105905 0.73 0.416629
Target:  5'- aAGGGGCGGC-UgAcCCUGGCGGACAa -3'
miRNA:   3'- gUUCCUGCUGcAgUcGGACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 101115 0.73 0.437922
Target:  5'- gAAGGACGacucagagcgcggcuGCG-CGGaCCUGGUGGACAa -3'
miRNA:   3'- gUUCCUGC---------------UGCaGUC-GGACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 83910 0.73 0.437922
Target:  5'- aCGGGGGCGGCGccugcuggcccaggcUCGGCCgGGCGG-CGg -3'
miRNA:   3'- -GUUCCUGCUGC---------------AGUCGGaCCGCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 82517 0.73 0.461677
Target:  5'- -cGGGGCGGcCGUCcagcGCCagGGCGGGCAg -3'
miRNA:   3'- guUCCUGCU-GCAGu---CGGa-CCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 1371 0.72 0.470993
Target:  5'- uGAGGACGGCGgugUCGGCCaGGCaGAUg -3'
miRNA:   3'- gUUCCUGCUGC---AGUCGGaCCGcCUGu -5'
25552 5' -57.3 NC_005337.1 + 41600 0.72 0.489905
Target:  5'- gCGAGGGCGugGUCguggcgaaggaGGCCgUGGUGcGACGc -3'
miRNA:   3'- -GUUCCUGCugCAG-----------UCGG-ACCGC-CUGU- -5'
25552 5' -57.3 NC_005337.1 + 115074 0.71 0.527748
Target:  5'- --cGGACGACGUCuGCgUGGgcaucguggagucCGGACAc -3'
miRNA:   3'- guuCCUGCUGCAGuCGgACC-------------GCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 2724 0.71 0.538622
Target:  5'- aCGAGcgcGACGACGUCcGCCgguaGCGGGCAc -3'
miRNA:   3'- -GUUC---CUGCUGCAGuCGGac--CGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 99278 0.71 0.558582
Target:  5'- --cGGcACGGcCGUCuGCCUGGCGcGGCGc -3'
miRNA:   3'- guuCC-UGCU-GCAGuCGGACCGC-CUGU- -5'
25552 5' -57.3 NC_005337.1 + 125556 0.71 0.578745
Target:  5'- cCAAGGACGACGUgg----GGCGGACGc -3'
miRNA:   3'- -GUUCCUGCUGCAgucggaCCGCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.