miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25552 5' -57.3 NC_005337.1 + 50397 0.67 0.805732
Target:  5'- gCGGGGGCGcgccgcGCGUCGGUgaCggagcGGCGGGCGc -3'
miRNA:   3'- -GUUCCUGC------UGCAGUCG--Ga----CCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 1001 0.68 0.740443
Target:  5'- gGAGGGCgGGCGUC-GCCUGGaGGcCGu -3'
miRNA:   3'- gUUCCUG-CUGCAGuCGGACCgCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 42970 0.68 0.750126
Target:  5'- aCGAGGACGGCGcggCgacgGGCCagacguugaacuUGGCGGAgAg -3'
miRNA:   3'- -GUUCCUGCUGCa--G----UCGG------------ACCGCCUgU- -5'
25552 5' -57.3 NC_005337.1 + 93622 0.67 0.758753
Target:  5'- aGAGGGCGccccacuGCGUCGGgaCCUGGauGACGa -3'
miRNA:   3'- gUUCCUGC-------UGCAGUC--GGACCgcCUGU- -5'
25552 5' -57.3 NC_005337.1 + 34414 0.67 0.769173
Target:  5'- -cAGGGCaGGCccgaccGCCUGGCGGGCGg -3'
miRNA:   3'- guUCCUG-CUGcagu--CGGACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 83969 0.67 0.778518
Target:  5'- -cAGGGCaGCGgCGGCgCgGGCGGGCAc -3'
miRNA:   3'- guUCCUGcUGCaGUCG-GaCCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 13902 0.67 0.786817
Target:  5'- aCGGGGACcaGCGUCaucgucgGGUCgugGGCGGGCGc -3'
miRNA:   3'- -GUUCCUGc-UGCAG-------UCGGa--CCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 20960 0.67 0.787732
Target:  5'- uCAAGGGCGGC-UC-GUC-GGCGGACc -3'
miRNA:   3'- -GUUCCUGCUGcAGuCGGaCCGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 42126 0.67 0.796806
Target:  5'- aCGAGGACGGCGcUGGCCc-GCGGcGCGu -3'
miRNA:   3'- -GUUCCUGCUGCaGUCGGacCGCC-UGU- -5'
25552 5' -57.3 NC_005337.1 + 122708 0.68 0.714847
Target:  5'- cCGAGGugGugGUCcGCgUGcugucgcacgugcccGCGGACGa -3'
miRNA:   3'- -GUUCCugCugCAGuCGgAC---------------CGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 68272 0.68 0.710863
Target:  5'- uCGAGGAcuuCGACGUCugcGGCCggccGGCGG-CGu -3'
miRNA:   3'- -GUUCCU---GCUGCAG---UCGGa---CCGCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 44367 0.68 0.704868
Target:  5'- -uGGGGCGACGccccgCcgcccaccgggauggGGCCugUGGCGGACAu -3'
miRNA:   3'- guUCCUGCUGCa----G---------------UCGG--ACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 110340 0.74 0.390922
Target:  5'- --cGGGCGGCGUCGcgcgcGCCUGccGCGGGCGc -3'
miRNA:   3'- guuCCUGCUGCAGU-----CGGAC--CGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 1051 0.74 0.407945
Target:  5'- --cGGGCGGCGggaGGCCggcgggGGCGGACu -3'
miRNA:   3'- guuCCUGCUGCag-UCGGa-----CCGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 83910 0.73 0.437922
Target:  5'- aCGGGGGCGGCGccugcuggcccaggcUCGGCCgGGCGG-CGg -3'
miRNA:   3'- -GUUCCUGCUGC---------------AGUCGGaCCGCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 101115 0.73 0.437922
Target:  5'- gAAGGACGacucagagcgcggcuGCG-CGGaCCUGGUGGACAa -3'
miRNA:   3'- gUUCCUGC---------------UGCaGUC-GGACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 1371 0.72 0.470993
Target:  5'- uGAGGACGGCGgugUCGGCCaGGCaGAUg -3'
miRNA:   3'- gUUCCUGCUGC---AGUCGGaCCGcCUGu -5'
25552 5' -57.3 NC_005337.1 + 2724 0.71 0.538622
Target:  5'- aCGAGcgcGACGACGUCcGCCgguaGCGGGCAc -3'
miRNA:   3'- -GUUC---CUGCUGCAGuCGGac--CGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 99278 0.71 0.558582
Target:  5'- --cGGcACGGcCGUCuGCCUGGCGcGGCGc -3'
miRNA:   3'- guuCC-UGCU-GCAGuCGGACCGC-CUGU- -5'
25552 5' -57.3 NC_005337.1 + 125556 0.71 0.578745
Target:  5'- cCAAGGACGACGUgg----GGCGGACGc -3'
miRNA:   3'- -GUUCCUGCUGCAgucggaCCGCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.