Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25558 | 5' | -59.5 | NC_005337.1 | + | 1671 | 0.67 | 0.659852 |
Target: 5'- -cCGCC-GCCGcgUCGUUGCGguGCCCGGu -3' miRNA: 3'- gaGCGGaCGGC--AGCGAUGC--UGGGCUu -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 2164 | 0.71 | 0.436187 |
Target: 5'- --aGCCUGCCG-CGC-ACGGCgCCGAc -3' miRNA: 3'- gagCGGACGGCaGCGaUGCUG-GGCUu -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 10011 | 0.67 | 0.689967 |
Target: 5'- -gCGCC-GCCGUCGUcgugcuCGAuCCCGGAa -3' miRNA: 3'- gaGCGGaCGGCAGCGau----GCU-GGGCUU- -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 10824 | 0.69 | 0.549309 |
Target: 5'- -aUGCCgUGCUGgCGCUGCGGCgCGGAg -3' miRNA: 3'- gaGCGG-ACGGCaGCGAUGCUGgGCUU- -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 15869 | 0.69 | 0.539463 |
Target: 5'- gCUCGCCgGCC-UCGCUcAUGACCgGGu -3' miRNA: 3'- -GAGCGGaCGGcAGCGA-UGCUGGgCUu -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 16046 | 0.69 | 0.56916 |
Target: 5'- -gCGCCUGCCGcCGC-GCGGgCCGc- -3' miRNA: 3'- gaGCGGACGGCaGCGaUGCUgGGCuu -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 23889 | 0.71 | 0.427358 |
Target: 5'- uUCGCCUGCCuccuccgccuGUCGCUGCcgcgcGCCCGc- -3' miRNA: 3'- gAGCGGACGG----------CAGCGAUGc----UGGGCuu -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 26754 | 0.67 | 0.649759 |
Target: 5'- gUCGCCgcgaaacgugGUCGUCG-UGCGACCCa-- -3' miRNA: 3'- gAGCGGa---------CGGCAGCgAUGCUGGGcuu -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 27824 | 0.68 | 0.589183 |
Target: 5'- -cCGgCUGUCGUUGCUGCGGuuCUCGAAc -3' miRNA: 3'- gaGCgGACGGCAGCGAUGCU--GGGCUU- -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 28032 | 0.67 | 0.689967 |
Target: 5'- aUCGCCUGCCGcCGgcacGCGACCg--- -3' miRNA: 3'- gAGCGGACGGCaGCga--UGCUGGgcuu -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 29544 | 0.67 | 0.667911 |
Target: 5'- uCUCGCCgaucuugaugccGCCGcCGCggcgGCGGCCCu-- -3' miRNA: 3'- -GAGCGGa-----------CGGCaGCGa---UGCUGGGcuu -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 36281 | 0.68 | 0.609328 |
Target: 5'- -cCGCaCUGCgCGUC-CUGCGuucGCCCGAAg -3' miRNA: 3'- gaGCG-GACG-GCAGcGAUGC---UGGGCUU- -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 38695 | 0.69 | 0.55921 |
Target: 5'- -cCGCCUGgUGUCgGCgGCGGCCCGu- -3' miRNA: 3'- gaGCGGACgGCAG-CGaUGCUGGGCuu -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 38903 | 0.72 | 0.376699 |
Target: 5'- gUCGCgCgGCCGUCGCUguugccuucgGCGACUCGGc -3' miRNA: 3'- gAGCG-GaCGGCAGCGA----------UGCUGGGCUu -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 39175 | 0.7 | 0.489357 |
Target: 5'- aUCGCCgacugcggcaagGCCGUCGCcGCGggcuacgcggACCCGGAc -3' miRNA: 3'- gAGCGGa-----------CGGCAGCGaUGC----------UGGGCUU- -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 47478 | 0.67 | 0.679964 |
Target: 5'- gUCG-CUGCCGUCGCgg-GACCUGc- -3' miRNA: 3'- gAGCgGACGGCAGCGaugCUGGGCuu -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 50435 | 0.66 | 0.709823 |
Target: 5'- gUCGUC-GCCGgUGCUGgaGACCCGGAu -3' miRNA: 3'- gAGCGGaCGGCaGCGAUg-CUGGGCUU- -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 52081 | 0.66 | 0.739102 |
Target: 5'- -cCGCCgGCCGUgCGCgcccgGCGGCCgCGu- -3' miRNA: 3'- gaGCGGaCGGCA-GCGa----UGCUGG-GCuu -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 56621 | 0.67 | 0.659852 |
Target: 5'- uUCGCCgGCCG-CGuCUACGACgCGc- -3' miRNA: 3'- gAGCGGaCGGCaGC-GAUGCUGgGCuu -5' |
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25558 | 5' | -59.5 | NC_005337.1 | + | 66028 | 0.67 | 0.669923 |
Target: 5'- gCUCGCCcacgcGCCGgccgCGCUcCGgaACCCGGAc -3' miRNA: 3'- -GAGCGGa----CGGCa---GCGAuGC--UGGGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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