miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25558 5' -59.5 NC_005337.1 + 95048 0.7 0.510311
Target:  5'- -aCGCCUGCgCGUUGUcGCGcacGCCCGGGu -3'
miRNA:   3'- gaGCGGACG-GCAGCGaUGC---UGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 122721 0.67 0.659852
Target:  5'- -cCGCgUGCUGUCGC-ACGuGCCCGc- -3'
miRNA:   3'- gaGCGgACGGCAGCGaUGC-UGGGCuu -5'
25558 5' -59.5 NC_005337.1 + 1671 0.67 0.659852
Target:  5'- -cCGCC-GCCGcgUCGUUGCGguGCCCGGu -3'
miRNA:   3'- gaGCGGaCGGC--AGCGAUGC--UGGGCUu -5'
25558 5' -59.5 NC_005337.1 + 47478 0.67 0.679964
Target:  5'- gUCG-CUGCCGUCGCgg-GACCUGc- -3'
miRNA:   3'- gAGCgGACGGCAGCGaugCUGGGCuu -5'
25558 5' -59.5 NC_005337.1 + 28032 0.67 0.689967
Target:  5'- aUCGCCUGCCGcCGgcacGCGACCg--- -3'
miRNA:   3'- gAGCGGACGGCaGCga--UGCUGGgcuu -5'
25558 5' -59.5 NC_005337.1 + 98589 0.66 0.699923
Target:  5'- gCUCGCCaGCCgGUCGaagGCGGCCUc-- -3'
miRNA:   3'- -GAGCGGaCGG-CAGCga-UGCUGGGcuu -5'
25558 5' -59.5 NC_005337.1 + 117508 0.66 0.709823
Target:  5'- -cUGCCUGCuCGaggUGCU-CGACCUGAAc -3'
miRNA:   3'- gaGCGGACG-GCa--GCGAuGCUGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 52081 0.66 0.739102
Target:  5'- -cCGCCgGCCGUgCGCgcccgGCGGCCgCGu- -3'
miRNA:   3'- gaGCGGaCGGCA-GCGa----UGCUGG-GCuu -5'
25558 5' -59.5 NC_005337.1 + 128301 0.66 0.748692
Target:  5'- -gCGCCUggcGCCGUCuGCUcgcgcGCGGCgCGAGc -3'
miRNA:   3'- gaGCGGA---CGGCAG-CGA-----UGCUGgGCUU- -5'
25558 5' -59.5 NC_005337.1 + 76241 0.67 0.659852
Target:  5'- -aCGCC-GCCGUCGaagagcGCGGCCUGGc -3'
miRNA:   3'- gaGCGGaCGGCAGCga----UGCUGGGCUu -5'
25558 5' -59.5 NC_005337.1 + 26754 0.67 0.649759
Target:  5'- gUCGCCgcgaaacgugGUCGUCG-UGCGACCCa-- -3'
miRNA:   3'- gAGCGGa---------CGGCAGCgAUGCUGGGcuu -5'
25558 5' -59.5 NC_005337.1 + 131888 0.69 0.549309
Target:  5'- -cCGCCUGCgcgUGUCGUcgACGcACCCGAu -3'
miRNA:   3'- gaGCGGACG---GCAGCGa-UGC-UGGGCUu -5'
25558 5' -59.5 NC_005337.1 + 38695 0.69 0.55921
Target:  5'- -cCGCCUGgUGUCgGCgGCGGCCCGu- -3'
miRNA:   3'- gaGCGGACgGCAG-CGaUGCUGGGCuu -5'
25558 5' -59.5 NC_005337.1 + 16046 0.69 0.56916
Target:  5'- -gCGCCUGCCGcCGC-GCGGgCCGc- -3'
miRNA:   3'- gaGCGGACGGCaGCGaUGCUgGGCuu -5'
25558 5' -59.5 NC_005337.1 + 27824 0.68 0.589183
Target:  5'- -cCGgCUGUCGUUGCUGCGGuuCUCGAAc -3'
miRNA:   3'- gaGCgGACGGCAGCGAUGCU--GGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 36281 0.68 0.609328
Target:  5'- -cCGCaCUGCgCGUC-CUGCGuucGCCCGAAg -3'
miRNA:   3'- gaGCG-GACG-GCAGcGAUGC---UGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 132045 0.68 0.618419
Target:  5'- cCUCGCgcgguucCUGCgCG-CGCUcGCGGCCCGGg -3'
miRNA:   3'- -GAGCG-------GACG-GCaGCGA-UGCUGGGCUu -5'
25558 5' -59.5 NC_005337.1 + 86331 0.68 0.62954
Target:  5'- gUCGCCagcgucagGCCGgccuccucCGCaACGACCCGGGg -3'
miRNA:   3'- gAGCGGa-------CGGCa-------GCGaUGCUGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 122674 0.67 0.648749
Target:  5'- gUgGCCcGCCGggugugccccugcUCGCUGCcGCCCGAGg -3'
miRNA:   3'- gAgCGGaCGGC-------------AGCGAUGcUGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 115425 0.66 0.728449
Target:  5'- uCUCGCCgGCCGuccgggagUCGCUGggguuccugguguCGGCCgGAGa -3'
miRNA:   3'- -GAGCGGaCGGC--------AGCGAU-------------GCUGGgCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.