miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25559 3' -60.3 NC_005337.1 + 58215 0.66 0.750261
Target:  5'- gCGGCgUACCG-CCGCgCGGcGGUCa -3'
miRNA:   3'- gGUCGgGUGGUaGGUGgGCCuCCAGc -5'
25559 3' -60.3 NC_005337.1 + 133609 0.66 0.750261
Target:  5'- -gGGCCCGCUG-CUGCUgcaGGAGGUCa -3'
miRNA:   3'- ggUCGGGUGGUaGGUGGg--CCUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 19968 0.66 0.750261
Target:  5'- aCCGGCgCCGCgAgagcUCCuCCaGGAGGUCc -3'
miRNA:   3'- -GGUCG-GGUGgU----AGGuGGgCCUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 133609 0.66 0.750261
Target:  5'- -gGGCCCGCUG-CUGCUgcaGGAGGUCa -3'
miRNA:   3'- ggUCGGGUGGUaGGUGGg--CCUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 74974 0.66 0.750261
Target:  5'- aCCAGUCgCAUCAUCUccgACCCGcAGGUg- -3'
miRNA:   3'- -GGUCGG-GUGGUAGG---UGGGCcUCCAgc -5'
25559 3' -60.3 NC_005337.1 + 103382 0.66 0.750261
Target:  5'- --cGCCUGCCGUCgCuacgACCCGaAGGUCGc -3'
miRNA:   3'- gguCGGGUGGUAG-G----UGGGCcUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 111106 0.66 0.744642
Target:  5'- uCCAGCagCGCC-UCCAcgcgggucagguucuCCCGGAGGa-- -3'
miRNA:   3'- -GGUCGg-GUGGuAGGU---------------GGGCCUCCagc -5'
25559 3' -60.3 NC_005337.1 + 92426 0.66 0.740877
Target:  5'- aCgAGCCCGCUc-CCGCCCGacGAGGagGa -3'
miRNA:   3'- -GgUCGGGUGGuaGGUGGGC--CUCCagC- -5'
25559 3' -60.3 NC_005337.1 + 128412 0.66 0.740877
Target:  5'- cCCAacGCCaCGCUccCCACCaGGGGGUCc -3'
miRNA:   3'- -GGU--CGG-GUGGuaGGUGGgCCUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 41710 0.66 0.739934
Target:  5'- -gAGCCgGCCGUCCucgaagaACCaGGAGG-CGa -3'
miRNA:   3'- ggUCGGgUGGUAGG-------UGGgCCUCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 23206 0.66 0.739934
Target:  5'- cUCAcGCCCGCggacaagcaguaCAUCCGCCgCgucauccuccaggGGAGGUCGu -3'
miRNA:   3'- -GGU-CGGGUG------------GUAGGUGG-G-------------CCUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 10418 0.66 0.735204
Target:  5'- gCCGcGCCCGCCGUCCaugcacgccgcgaacGCCgGGAcGGa-- -3'
miRNA:   3'- -GGU-CGGGUGGUAGG---------------UGGgCCU-CCagc -5'
25559 3' -60.3 NC_005337.1 + 108695 0.66 0.731404
Target:  5'- aCGGCgaCACCGacUCCGuguuCCUGGAGGUgGg -3'
miRNA:   3'- gGUCGg-GUGGU--AGGU----GGGCCUCCAgC- -5'
25559 3' -60.3 NC_005337.1 + 99648 0.66 0.731404
Target:  5'- --cGCCCGCCGUCUucaacgaggaGCa-GGAGGUCc -3'
miRNA:   3'- gguCGGGUGGUAGG----------UGggCCUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 20605 0.66 0.731404
Target:  5'- cCCGGaCCCGCCugucgcuucAUCguCgCCGGAGGcCGu -3'
miRNA:   3'- -GGUC-GGGUGG---------UAGguG-GGCCUCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 93963 0.66 0.731404
Target:  5'- gCAGCaguugccuugCCGCCAU-CGCCCucgggcgaGGAGGUCa -3'
miRNA:   3'- gGUCG----------GGUGGUAgGUGGG--------CCUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 49020 0.66 0.731404
Target:  5'- aCCAGaCCAUCAU-CAUCgCGGuGGUCGu -3'
miRNA:   3'- -GGUCgGGUGGUAgGUGG-GCCuCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 85730 0.66 0.731404
Target:  5'- gCAGUCCGCCGUCgCggACgCGGAcgcGGUCu -3'
miRNA:   3'- gGUCGGGUGGUAG-G--UGgGCCU---CCAGc -5'
25559 3' -60.3 NC_005337.1 + 38533 0.66 0.728546
Target:  5'- -gGGCCCGCCGUgCgACUCGcucuucuuccguccGGGGUCGc -3'
miRNA:   3'- ggUCGGGUGGUA-GgUGGGC--------------CUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 41027 0.66 0.721851
Target:  5'- -aGGCCCGCCAccagCCGCuCCGcGuuGUCGc -3'
miRNA:   3'- ggUCGGGUGGUa---GGUG-GGC-CucCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.