miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25559 3' -60.3 NC_005337.1 + 3643 0.69 0.535534
Target:  5'- uCCAGCgCCGCggccucguCGUCCGCgcagUCGGGGGUCu -3'
miRNA:   3'- -GGUCG-GGUG--------GUAGGUG----GGCCUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 9139 0.7 0.461062
Target:  5'- aCAGCgCGCUcgCCGCuuGGcGGUCGc -3'
miRNA:   3'- gGUCGgGUGGuaGGUGggCCuCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 10276 0.69 0.564576
Target:  5'- cCCGGaCCACCAUCCuggCGGAGGggccUCGg -3'
miRNA:   3'- -GGUCgGGUGGUAGGuggGCCUCC----AGC- -5'
25559 3' -60.3 NC_005337.1 + 10418 0.66 0.735204
Target:  5'- gCCGcGCCCGCCGUCCaugcacgccgcgaacGCCgGGAcGGa-- -3'
miRNA:   3'- -GGU-CGGGUGGUAGG---------------UGGgCCU-CCagc -5'
25559 3' -60.3 NC_005337.1 + 13849 0.7 0.507033
Target:  5'- gCAGUCCGCCG-CCugCCGGcucAGGaCGg -3'
miRNA:   3'- gGUCGGGUGGUaGGugGGCC---UCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 18487 0.67 0.633601
Target:  5'- uCCAGCaCCGgCGUCCAgCCGGGcgugaacauGUCGg -3'
miRNA:   3'- -GGUCG-GGUgGUAGGUgGGCCUc--------CAGC- -5'
25559 3' -60.3 NC_005337.1 + 19626 0.66 0.712226
Target:  5'- -aGGCCCG-CGUUCACCgGGGGGaUCc -3'
miRNA:   3'- ggUCGGGUgGUAGGUGGgCCUCC-AGc -5'
25559 3' -60.3 NC_005337.1 + 19968 0.66 0.750261
Target:  5'- aCCGGCgCCGCgAgagcUCCuCCaGGAGGUCc -3'
miRNA:   3'- -GGUCG-GGUGgU----AGGuGGgCCUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 20605 0.66 0.731404
Target:  5'- cCCGGaCCCGCCugucgcuucAUCguCgCCGGAGGcCGu -3'
miRNA:   3'- -GGUC-GGGUGG---------UAGguG-GGCCUCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 22910 0.66 0.721851
Target:  5'- aCC-GUgaGCCAUCUugCCGGAGaGUCu -3'
miRNA:   3'- -GGuCGggUGGUAGGugGGCCUC-CAGc -5'
25559 3' -60.3 NC_005337.1 + 23206 0.66 0.739934
Target:  5'- cUCAcGCCCGCggacaagcaguaCAUCCGCCgCgucauccuccaggGGAGGUCGu -3'
miRNA:   3'- -GGU-CGGGUG------------GUAGGUGG-G-------------CCUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 23501 0.71 0.434559
Target:  5'- uCCGGUCCA-UGUCCAUCCGGGGcUCGa -3'
miRNA:   3'- -GGUCGGGUgGUAGGUGGGCCUCcAGC- -5'
25559 3' -60.3 NC_005337.1 + 36584 0.68 0.58122
Target:  5'- gCCGGUCCGCCAgcgcggcgugcagaUCCACCauGuGGUUGc -3'
miRNA:   3'- -GGUCGGGUGGU--------------AGGUGGgcCuCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 37063 0.66 0.712226
Target:  5'- gCCGGCUgACCAcgauggCCACCaUGGcgcGGUCGa -3'
miRNA:   3'- -GGUCGGgUGGUa-----GGUGG-GCCu--CCAGC- -5'
25559 3' -60.3 NC_005337.1 + 38533 0.66 0.728546
Target:  5'- -gGGCCCGCCGUgCgACUCGcucuucuuccguccGGGGUCGc -3'
miRNA:   3'- ggUCGGGUGGUA-GgUGGGC--------------CUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 39251 0.69 0.564576
Target:  5'- uCCuGCCCGCCGUcCCGCCguucgCGGuGGcCGc -3'
miRNA:   3'- -GGuCGGGUGGUA-GGUGG-----GCCuCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 41027 0.66 0.721851
Target:  5'- -aGGCCCGCCAccagCCGCuCCGcGuuGUCGc -3'
miRNA:   3'- ggUCGGGUGGUa---GGUG-GGC-CucCAGC- -5'
25559 3' -60.3 NC_005337.1 + 41571 0.66 0.718971
Target:  5'- aCC-GCCCGCCGUuguagaggucgccgCCGCCCaGGaAGGUg- -3'
miRNA:   3'- -GGuCGGGUGGUA--------------GGUGGG-CC-UCCAgc -5'
25559 3' -60.3 NC_005337.1 + 41710 0.66 0.739934
Target:  5'- -gAGCCgGCCGUCCucgaagaACCaGGAGG-CGa -3'
miRNA:   3'- ggUCGGgUGGUAGG-------UGGgCCUCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 42617 0.7 0.497675
Target:  5'- --cGCCCGCCAUgugcggCACCgCGGuGGUCGa -3'
miRNA:   3'- gguCGGGUGGUAg-----GUGG-GCCuCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.