miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25559 3' -60.3 NC_005337.1 + 71786 0.67 0.653416
Target:  5'- gCGG-CCGCC--CCGCCCG-AGGUCGg -3'
miRNA:   3'- gGUCgGGUGGuaGGUGGGCcUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 51530 0.69 0.568482
Target:  5'- -gAGCCCACCAucgcacacucgcugcUCCGCUCGGAGc--- -3'
miRNA:   3'- ggUCGGGUGGU---------------AGGUGGGCCUCcagc -5'
25559 3' -60.3 NC_005337.1 + 82224 0.68 0.574353
Target:  5'- gCGGCCCGCC-UCCGCCgugcaGGAGaaGUUGc -3'
miRNA:   3'- gGUCGGGUGGuAGGUGGg----CCUC--CAGC- -5'
25559 3' -60.3 NC_005337.1 + 45184 0.68 0.613783
Target:  5'- aCCGGCUgGCCGU--GCCCGGGGcgcuGUCGc -3'
miRNA:   3'- -GGUCGGgUGGUAggUGGGCCUC----CAGC- -5'
25559 3' -60.3 NC_005337.1 + 81698 0.68 0.623689
Target:  5'- gCCAGCgCCgccgcGCCGUCC-CCgCGGAGccaGUCGu -3'
miRNA:   3'- -GGUCG-GG-----UGGUAGGuGG-GCCUC---CAGC- -5'
25559 3' -60.3 NC_005337.1 + 18487 0.67 0.633601
Target:  5'- uCCAGCaCCGgCGUCCAgCCGGGcgugaacauGUCGg -3'
miRNA:   3'- -GGUCG-GGUgGUAGGUgGGCCUc--------CAGC- -5'
25559 3' -60.3 NC_005337.1 + 103336 0.67 0.633601
Target:  5'- gCGGCUCACCcgCccgCugCUGGuGGUCGa -3'
miRNA:   3'- gGUCGGGUGGuaG---GugGGCCuCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 127692 0.67 0.633601
Target:  5'- gUCGGCCgGCuCGUCCAUCCGGAccgCGc -3'
miRNA:   3'- -GGUCGGgUG-GUAGGUGGGCCUccaGC- -5'
25559 3' -60.3 NC_005337.1 + 95483 0.67 0.653416
Target:  5'- gCAGCCaguCCAUgCACUCGGGcGcGUCGg -3'
miRNA:   3'- gGUCGGgu-GGUAgGUGGGCCU-C-CAGC- -5'
25559 3' -60.3 NC_005337.1 + 10276 0.69 0.564576
Target:  5'- cCCGGaCCACCAUCCuggCGGAGGggccUCGg -3'
miRNA:   3'- -GGUCgGGUGGUAGGuggGCCUCC----AGC- -5'
25559 3' -60.3 NC_005337.1 + 132956 0.7 0.497675
Target:  5'- gCGGCCUcguGCaCGUgCACCUGGuGGUCGu -3'
miRNA:   3'- gGUCGGG---UG-GUAgGUGGGCCuCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 42617 0.7 0.497675
Target:  5'- --cGCCCGCCAUgugcggCACCgCGGuGGUCGa -3'
miRNA:   3'- gguCGGGUGGUAg-----GUGG-GCCuCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 90872 0.76 0.219083
Target:  5'- aCCAGCgcggCCACCGUcuuggugcccaCCGCCCGGGGGUa- -3'
miRNA:   3'- -GGUCG----GGUGGUA-----------GGUGGGCCUCCAgc -5'
25559 3' -60.3 NC_005337.1 + 61677 0.73 0.338089
Target:  5'- aCCAcGCCCGCgCG-CgACCCGGAGGcgUCGg -3'
miRNA:   3'- -GGU-CGGGUG-GUaGgUGGGCCUCC--AGC- -5'
25559 3' -60.3 NC_005337.1 + 75210 0.72 0.392426
Target:  5'- aCCAGC--GCCAgCCACCCGGA-GUCGu -3'
miRNA:   3'- -GGUCGggUGGUaGGUGGGCCUcCAGC- -5'
25559 3' -60.3 NC_005337.1 + 92293 0.72 0.400639
Target:  5'- gCAGCUguCCAUCC-UCCGGAcGGUCa -3'
miRNA:   3'- gGUCGGguGGUAGGuGGGCCU-CCAGc -5'
25559 3' -60.3 NC_005337.1 + 46381 0.72 0.400639
Target:  5'- gCCAGCgCgucaGCCAggUCCugCCGcGAGGUCa -3'
miRNA:   3'- -GGUCGgG----UGGU--AGGugGGC-CUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 98255 0.71 0.434559
Target:  5'- gCAGUCCgugucGCCGUCCACgaCGGuGGUCa -3'
miRNA:   3'- gGUCGGG-----UGGUAGGUGg-GCCuCCAGc -5'
25559 3' -60.3 NC_005337.1 + 76634 0.71 0.440665
Target:  5'- aCgAGCaccaCCACCGUCCAguuggugaacacguCCCGGAGGUg- -3'
miRNA:   3'- -GgUCG----GGUGGUAGGU--------------GGGCCUCCAgc -5'
25559 3' -60.3 NC_005337.1 + 46056 0.7 0.479197
Target:  5'- gCAGCCCGCC-UCCuCgaGGAGGcCGg -3'
miRNA:   3'- gGUCGGGUGGuAGGuGggCCUCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.