miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25559 3' -60.3 NC_005337.1 + 102755 1.11 0.00091
Target:  5'- aCCAGCCCACCAUCCACCCGGAGGUCGa -3'
miRNA:   3'- -GGUCGGGUGGUAGGUGGGCCUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 88752 0.67 0.633601
Target:  5'- aCCGGCUC-CCGacgCCgaggACCCGGAGG-CGc -3'
miRNA:   3'- -GGUCGGGuGGUa--GG----UGGGCCUCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 68764 0.67 0.673166
Target:  5'- aCCAgGUUCACCAgcUCCACgCGGAuGGcCGa -3'
miRNA:   3'- -GGU-CGGGUGGU--AGGUGgGCCU-CCaGC- -5'
25559 3' -60.3 NC_005337.1 + 103382 0.66 0.750261
Target:  5'- --cGCCUGCCGUCgCuacgACCCGaAGGUCGc -3'
miRNA:   3'- gguCGGGUGGUAG-G----UGGGCcUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 111525 0.7 0.470085
Target:  5'- aCCgAGCCCGCgcUCCGCCgCGuGcAGGUCGg -3'
miRNA:   3'- -GG-UCGGGUGguAGGUGG-GC-C-UCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 103596 0.7 0.479197
Target:  5'- aCAGCCCGCCAUguuguuauaCC-CCCGGaAGGcccgCGa -3'
miRNA:   3'- gGUCGGGUGGUA---------GGuGGGCC-UCCa---GC- -5'
25559 3' -60.3 NC_005337.1 + 120410 0.7 0.507033
Target:  5'- gCuGCCCACgA-CCGuCCCGGAGG-CGg -3'
miRNA:   3'- gGuCGGGUGgUaGGU-GGGCCUCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 75196 0.69 0.535534
Target:  5'- uCCGGCCUGuCCAcggucUUCugCCGGcccAGGUCGg -3'
miRNA:   3'- -GGUCGGGU-GGU-----AGGugGGCC---UCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 118435 0.69 0.554844
Target:  5'- -gGGCgaCACCAUCCGCCaGGAGGa-- -3'
miRNA:   3'- ggUCGg-GUGGUAGGUGGgCCUCCagc -5'
25559 3' -60.3 NC_005337.1 + 97911 0.67 0.633601
Target:  5'- uCCAGCCagggGCCG-CCGCCCGuGGG-CGu -3'
miRNA:   3'- -GGUCGGg---UGGUaGGUGGGCcUCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 36584 0.68 0.58122
Target:  5'- gCCGGUCCGCCAgcgcggcgugcagaUCCACCauGuGGUUGc -3'
miRNA:   3'- -GGUCGGGUGGU--------------AGGUGGgcCuCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 52265 0.69 0.545161
Target:  5'- aCCGGCCCAUgaucagcgaCAUCC-CCaucGAGGUCGc -3'
miRNA:   3'- -GGUCGGGUG---------GUAGGuGGgc-CUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 59371 0.74 0.309585
Target:  5'- gCCAGCCgCGCCAUCaCGCCCccGGcguccucGGUCGg -3'
miRNA:   3'- -GGUCGG-GUGGUAG-GUGGG--CCu------CCAGC- -5'
25559 3' -60.3 NC_005337.1 + 102535 0.68 0.594015
Target:  5'- -gAGUCCAUCuUCCugCgcgaGGAGGUCGu -3'
miRNA:   3'- ggUCGGGUGGuAGGugGg---CCUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 23501 0.71 0.434559
Target:  5'- uCCGGUCCA-UGUCCAUCCGGGGcUCGa -3'
miRNA:   3'- -GGUCGGGUgGUAGGUGGGCCUCcAGC- -5'
25559 3' -60.3 NC_005337.1 + 3643 0.69 0.535534
Target:  5'- uCCAGCgCCGCggccucguCGUCCGCgcagUCGGGGGUCu -3'
miRNA:   3'- -GGUCG-GGUG--------GUAGGUG----GGCCUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 88022 0.68 0.623689
Target:  5'- gCCGGCCCACCAUCC------AGGUCa -3'
miRNA:   3'- -GGUCGGGUGGUAGGugggccUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 105451 0.67 0.653416
Target:  5'- gCUGG-CCGCCAUCUucuUCCGGGuGGUCGu -3'
miRNA:   3'- -GGUCgGGUGGUAGGu--GGGCCU-CCAGC- -5'
25559 3' -60.3 NC_005337.1 + 9139 0.7 0.461062
Target:  5'- aCAGCgCGCUcgCCGCuuGGcGGUCGc -3'
miRNA:   3'- gGUCGgGUGGuaGGUGggCCuCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 13849 0.7 0.507033
Target:  5'- gCAGUCCGCCG-CCugCCGGcucAGGaCGg -3'
miRNA:   3'- gGUCGGGUGGUaGGugGGCC---UCCaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.