miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 38905 0.65 0.955285
Target:  5'- cGCGCGgccgucgcuguugcCUUCGgcGACUcgGCGCUCCg -3'
miRNA:   3'- aCGCGU--------------GAAGUacCUGAugCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 93793 0.66 0.952452
Target:  5'- cGCGCuACgaCGUGGu---CGCGgCUCCa -3'
miRNA:   3'- aCGCG-UGaaGUACCugauGCGC-GAGG- -5'
25562 5' -53.8 NC_005337.1 + 110081 0.66 0.952452
Target:  5'- cGCGCGCcUCGccGGuaacggcgcgagGCUGCGCG-UCCa -3'
miRNA:   3'- aCGCGUGaAGUa-CC------------UGAUGCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 24387 0.66 0.952452
Target:  5'- cGCGCAC---GUGGcggACGUGCUCg -3'
miRNA:   3'- aCGCGUGaagUACCugaUGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 20780 0.66 0.952452
Target:  5'- -aCGCGCUUCGcggGGACggGCGUGC-Cg -3'
miRNA:   3'- acGCGUGAAGUa--CCUGa-UGCGCGaGg -5'
25562 5' -53.8 NC_005337.1 + 11375 0.66 0.952038
Target:  5'- aGCGCGCUcgccaUCGgcGGGCUgAUGCGCcagggccccggguUCCg -3'
miRNA:   3'- aCGCGUGA-----AGUa-CCUGA-UGCGCG-------------AGG- -5'
25562 5' -53.8 NC_005337.1 + 38477 0.66 0.9482
Target:  5'- gUGCGCGCc----GGGC-GCGCGCgucgCCg -3'
miRNA:   3'- -ACGCGUGaaguaCCUGaUGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 91761 0.66 0.9482
Target:  5'- cGUGCGCcUCGaagcUGGACgucCGCaGCUUCa -3'
miRNA:   3'- aCGCGUGaAGU----ACCUGau-GCG-CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 105790 0.66 0.9482
Target:  5'- cGCGCGCcgCGcGGcCgcaucCGUGCUCCa -3'
miRNA:   3'- aCGCGUGaaGUaCCuGau---GCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 3373 0.66 0.9482
Target:  5'- aUGuCGUcgUUCGUGGGCgagaaGCGCGCgugcgCCa -3'
miRNA:   3'- -AC-GCGugAAGUACCUGa----UGCGCGa----GG- -5'
25562 5' -53.8 NC_005337.1 + 132061 0.66 0.9482
Target:  5'- cGCGCGCUcgCGgcccGGGCcGCGCccGCgUCCg -3'
miRNA:   3'- aCGCGUGAa-GUa---CCUGaUGCG--CG-AGG- -5'
25562 5' -53.8 NC_005337.1 + 109263 0.66 0.9482
Target:  5'- cGCGCACgUCgaagcgGUGGAagcuguccaUGCGCGCguugcagCCg -3'
miRNA:   3'- aCGCGUGaAG------UACCUg--------AUGCGCGa------GG- -5'
25562 5' -53.8 NC_005337.1 + 38337 0.66 0.9482
Target:  5'- cGCGUcugGCUggaCGUGGAgCgcgagGCGCGCgcggCCg -3'
miRNA:   3'- aCGCG---UGAa--GUACCU-Ga----UGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 76036 0.66 0.9482
Target:  5'- cGcCGCGCc----GGACU-UGCGCUCCa -3'
miRNA:   3'- aC-GCGUGaaguaCCUGAuGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 36924 0.66 0.9482
Target:  5'- cGCaGCACccgCGcGGACUuucgcguccaGCGCUCCa -3'
miRNA:   3'- aCG-CGUGaa-GUaCCUGAug--------CGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 131252 0.66 0.9482
Target:  5'- cGCGCACaUCGgcgcGC-ACGCGCUgCCg -3'
miRNA:   3'- aCGCGUGaAGUacc-UGaUGCGCGA-GG- -5'
25562 5' -53.8 NC_005337.1 + 88313 0.66 0.9482
Target:  5'- cGgGgACgucagCGUGGACgccACGCGCgCCg -3'
miRNA:   3'- aCgCgUGaa---GUACCUGa--UGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 117298 0.66 0.943704
Target:  5'- cGCGUGCUggagGUGGACgccuccgcgcACGCGUUCg -3'
miRNA:   3'- aCGCGUGAag--UACCUGa---------UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 117354 0.66 0.943704
Target:  5'- -aCGUcgGCcgCGUGGACgUGCGCacGCUCCa -3'
miRNA:   3'- acGCG--UGaaGUACCUG-AUGCG--CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 59334 0.66 0.943704
Target:  5'- cGgGUACUUCGaGGACgaccacuggUGCGCGgccgcCUCCg -3'
miRNA:   3'- aCgCGUGAAGUaCCUG---------AUGCGC-----GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.