miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 38905 0.65 0.955285
Target:  5'- cGCGCGgccgucgcuguugcCUUCGgcGACUcgGCGCUCCg -3'
miRNA:   3'- aCGCGU--------------GAAGUacCUGAugCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 3466 0.66 0.93896
Target:  5'- gGCgGCACUgggUCGUcGcGACUGCGCGUgCUg -3'
miRNA:   3'- aCG-CGUGA---AGUA-C-CUGAUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 36924 0.66 0.9482
Target:  5'- cGCaGCACccgCGcGGACUuucgcguccaGCGCUCCa -3'
miRNA:   3'- aCG-CGUGaa-GUaCCUGAug--------CGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 38337 0.66 0.9482
Target:  5'- cGCGUcugGCUggaCGUGGAgCgcgagGCGCGCgcggCCg -3'
miRNA:   3'- aCGCG---UGAa--GUACCU-Ga----UGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 73398 0.66 0.931901
Target:  5'- gGCGCGCccgcacccgcagcUCGUGGACgugGUGCUCg -3'
miRNA:   3'- aCGCGUGa------------AGUACCUGaugCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 102585 0.66 0.943704
Target:  5'- gUGCGCAag--AUGGucuACUGCGUGUUCUu -3'
miRNA:   3'- -ACGCGUgaagUACC---UGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 66114 0.66 0.93896
Target:  5'- cUGCGCGCg-CGUGGAgUucaaguccaaGCGCGUggacggUCCg -3'
miRNA:   3'- -ACGCGUGaaGUACCUgA----------UGCGCG------AGG- -5'
25562 5' -53.8 NC_005337.1 + 28264 0.66 0.93896
Target:  5'- cGCGCACgugCGUGGugUcCGUGaUCa -3'
miRNA:   3'- aCGCGUGaa-GUACCugAuGCGCgAGg -5'
25562 5' -53.8 NC_005337.1 + 125729 0.66 0.93896
Target:  5'- cUGCGCACgcUCGUaGaGGCggaGCGCGCgugaCCg -3'
miRNA:   3'- -ACGCGUGa-AGUA-C-CUGa--UGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 38477 0.66 0.9482
Target:  5'- gUGCGCGCc----GGGC-GCGCGCgucgCCg -3'
miRNA:   3'- -ACGCGUGaaguaCCUGaUGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 131614 0.66 0.935995
Target:  5'- cGCGCACUcagCGUGGAg-GCGgccggcgccaccuucCGCUUCg -3'
miRNA:   3'- aCGCGUGAa--GUACCUgaUGC---------------GCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 133372 0.66 0.933968
Target:  5'- cGcCGCGCUcgUCGcgcucGGGCUccugcucgGCGCGCUCUu -3'
miRNA:   3'- aC-GCGUGA--AGUa----CCUGA--------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 59334 0.66 0.943704
Target:  5'- cGgGUACUUCGaGGACgaccacuggUGCGCGgccgcCUCCg -3'
miRNA:   3'- aCgCGUGAAGUaCCUG---------AUGCGC-----GAGG- -5'
25562 5' -53.8 NC_005337.1 + 117354 0.66 0.943704
Target:  5'- -aCGUcgGCcgCGUGGACgUGCGCacGCUCCa -3'
miRNA:   3'- acGCG--UGaaGUACCUG-AUGCG--CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 88313 0.66 0.9482
Target:  5'- cGgGgACgucagCGUGGACgccACGCGCgCCg -3'
miRNA:   3'- aCgCgUGaa---GUACCUGa--UGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 122388 0.66 0.93896
Target:  5'- cGUGCGCgaggUCGUGcugcgcGGCgGCGCGCggcgCCu -3'
miRNA:   3'- aCGCGUGa---AGUAC------CUGaUGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 114970 0.66 0.933968
Target:  5'- cGCGCuccgcCUaCGUGGGCgGCGauauaguccuaCGCUCCa -3'
miRNA:   3'- aCGCGu----GAaGUACCUGaUGC-----------GCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 28532 0.66 0.933968
Target:  5'- gGCGCAC-UCGUccucggaguagaGGAUccggACGCGC-CCa -3'
miRNA:   3'- aCGCGUGaAGUA------------CCUGa---UGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 52027 0.66 0.943704
Target:  5'- cGCGCGCgcggUCAUGGAguuccgggacCUGCGggaGCUg- -3'
miRNA:   3'- aCGCGUGa---AGUACCU----------GAUGCg--CGAgg -5'
25562 5' -53.8 NC_005337.1 + 95247 0.66 0.943704
Target:  5'- cGUGCAC-UCGUGcGCgcggcagACGCGCgggCCc -3'
miRNA:   3'- aCGCGUGaAGUACcUGa------UGCGCGa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.