miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 101580 1.13 0.002112
Target:  5'- uUGCGCACUUCAUGGACUACGCGCUCCg -3'
miRNA:   3'- -ACGCGUGAAGUACCUGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 57417 0.96 0.029557
Target:  5'- cGCGCACgcggccuaCGUGGACUACGCGCUCCg -3'
miRNA:   3'- aCGCGUGaa------GUACCUGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 21911 0.93 0.047554
Target:  5'- cGCGCGCUUCAUGGaggugGCcGCGCGCUCCg -3'
miRNA:   3'- aCGCGUGAAGUACC-----UGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 103898 0.84 0.165499
Target:  5'- cGCGCGCgaCAUGGACgugcuccGCGUGCUCCu -3'
miRNA:   3'- aCGCGUGaaGUACCUGa------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 91981 0.84 0.180732
Target:  5'- cGCGCuCUUCGUGGGCUuccuggcucugauguACGCGCUCa -3'
miRNA:   3'- aCGCGuGAAGUACCUGA---------------UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 98885 0.82 0.219322
Target:  5'- cGCGCGCgc---GGACUGCGCGCUCg -3'
miRNA:   3'- aCGCGUGaaguaCCUGAUGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 131081 0.8 0.273886
Target:  5'- aGCGCGagUUCGUGGuCUGCGCGCUggCCa -3'
miRNA:   3'- aCGCGUg-AAGUACCuGAUGCGCGA--GG- -5'
25562 5' -53.8 NC_005337.1 + 102484 0.8 0.280578
Target:  5'- cGCGUGCUcagCGUGGAggACGUGCUCCu -3'
miRNA:   3'- aCGCGUGAa--GUACCUgaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 80567 0.8 0.286712
Target:  5'- -aUGCGCUUCAUGGGCUauuuaggACGCGC-CCg -3'
miRNA:   3'- acGCGUGAAGUACCUGA-------UGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 108426 0.78 0.354668
Target:  5'- cGUGUACgggcUCAUGGGCUuccggaacaGCGCGCUCUu -3'
miRNA:   3'- aCGCGUGa---AGUACCUGA---------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 58894 0.78 0.387936
Target:  5'- cGUGCACUUCGUGGug-GCGCGgcaggaCUCCg -3'
miRNA:   3'- aCGCGUGAAGUACCugaUGCGC------GAGG- -5'
25562 5' -53.8 NC_005337.1 + 47972 0.78 0.387936
Target:  5'- --gGCuuCUUCGUGGACgggGCGCGCUUCg -3'
miRNA:   3'- acgCGu-GAAGUACCUGa--UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 56048 0.77 0.405322
Target:  5'- cGUGCGgUUCGUGGACacgcucucgUACGUGCUCa -3'
miRNA:   3'- aCGCGUgAAGUACCUG---------AUGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 68683 0.77 0.414197
Target:  5'- aGCGCGC-UCuUGGcCUGCGCGC-CCg -3'
miRNA:   3'- aCGCGUGaAGuACCuGAUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 114382 0.77 0.414197
Target:  5'- --aGCACgc---GGACUACGCGCUCCu -3'
miRNA:   3'- acgCGUGaaguaCCUGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 97055 0.76 0.450856
Target:  5'- aUGCGCuuCUUCGUGGACUccuucaagGCGCGC-Cg -3'
miRNA:   3'- -ACGCGu-GAAGUACCUGA--------UGCGCGaGg -5'
25562 5' -53.8 NC_005337.1 + 114145 0.75 0.539204
Target:  5'- aGCGCGcCUUCgccgaccucucgGUGGAggACGCGCUCUc -3'
miRNA:   3'- aCGCGU-GAAG------------UACCUgaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 50664 0.74 0.549419
Target:  5'- aGCGCugUggaucgCGUGGAUaACGCcaGCUCCu -3'
miRNA:   3'- aCGCGugAa-----GUACCUGaUGCG--CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 55218 0.74 0.549419
Target:  5'- gGCGCGCcgCAaGGACcagaccGCGCGUUCCg -3'
miRNA:   3'- aCGCGUGaaGUaCCUGa-----UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 38537 0.74 0.559692
Target:  5'- cGUGCACggCG-GGA--ACGCGCUCCg -3'
miRNA:   3'- aCGCGUGaaGUaCCUgaUGCGCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.