miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 24544 0.67 0.905243
Target:  5'- cUGCGCACcgCc--GACUGCucgGCGUUCCg -3'
miRNA:   3'- -ACGCGUGaaGuacCUGAUG---CGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 24691 0.68 0.862731
Target:  5'- cUGCucagGCGCUUCAagcaccUGGGCUGCuacCGCUCg -3'
miRNA:   3'- -ACG----CGUGAAGU------ACCUGAUGc--GCGAGg -5'
25562 5' -53.8 NC_005337.1 + 24977 0.66 0.933968
Target:  5'- gGUGCGCUUCuucGGCUgcaACGCGCgcauggacagcuUCCa -3'
miRNA:   3'- aCGCGUGAAGuacCUGA---UGCGCG------------AGG- -5'
25562 5' -53.8 NC_005337.1 + 25293 0.68 0.862731
Target:  5'- cGCGCACggCGggcGGGCcGCGCGUcgaCCg -3'
miRNA:   3'- aCGCGUGaaGUa--CCUGaUGCGCGa--GG- -5'
25562 5' -53.8 NC_005337.1 + 25447 0.72 0.66412
Target:  5'- cGCGCGCUUCggcaccGUGGAC-GCGUGCg-- -3'
miRNA:   3'- aCGCGUGAAG------UACCUGaUGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 25502 0.68 0.885044
Target:  5'- --aGCACguacUCGUuGAUgACGCGCUCCa -3'
miRNA:   3'- acgCGUGa---AGUAcCUGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 28264 0.66 0.93896
Target:  5'- cGCGCACgugCGUGGugUcCGUGaUCa -3'
miRNA:   3'- aCGCGUGaa-GUACCugAuGCGCgAGg -5'
25562 5' -53.8 NC_005337.1 + 28532 0.66 0.933968
Target:  5'- gGCGCAC-UCGUccucggaguagaGGAUccggACGCGC-CCa -3'
miRNA:   3'- aCGCGUGaAGUA------------CCUGa---UGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 29629 0.68 0.862731
Target:  5'- cGCGCccuucgcuGCUgaUCAcGGGCUccgagaugcGCGUGCUCCc -3'
miRNA:   3'- aCGCG--------UGA--AGUaCCUGA---------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 29820 0.74 0.580391
Target:  5'- cGCGUACUgUGUGuGCUGCGCguGCUCCa -3'
miRNA:   3'- aCGCGUGAaGUACcUGAUGCG--CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 35274 0.68 0.870395
Target:  5'- cGCGCACcUCggGGG--GCG-GCUCCa -3'
miRNA:   3'- aCGCGUGaAGuaCCUgaUGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 35374 0.69 0.829958
Target:  5'- cGUGUACUcCccGGGCUcgaGCGCGCagUCCg -3'
miRNA:   3'- aCGCGUGAaGuaCCUGA---UGCGCG--AGG- -5'
25562 5' -53.8 NC_005337.1 + 35779 0.67 0.923229
Target:  5'- gGCGCGugUCAUgacGGACgccgccgGCGCGCcCCu -3'
miRNA:   3'- aCGCGUgaAGUA---CCUGa------UGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 35854 0.68 0.877834
Target:  5'- cGUGCGCUgCggGGGCggACGCGCg-- -3'
miRNA:   3'- aCGCGUGAaGuaCCUGa-UGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 36924 0.66 0.9482
Target:  5'- cGCaGCACccgCGcGGACUuucgcguccaGCGCUCCa -3'
miRNA:   3'- aCG-CGUGaa-GUaCCUGAug--------CGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 37954 0.67 0.905243
Target:  5'- cGUGC-CUcgUCGUGGGgUACuGCGCggCCa -3'
miRNA:   3'- aCGCGuGA--AGUACCUgAUG-CGCGa-GG- -5'
25562 5' -53.8 NC_005337.1 + 38254 0.69 0.829958
Target:  5'- gGCGCGgaUCAUuucgcgacgGGAUaaaUAgGCGCUCCa -3'
miRNA:   3'- aCGCGUgaAGUA---------CCUG---AUgCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 38337 0.66 0.9482
Target:  5'- cGCGUcugGCUggaCGUGGAgCgcgagGCGCGCgcggCCg -3'
miRNA:   3'- aCGCG---UGAa--GUACCU-Ga----UGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 38477 0.66 0.9482
Target:  5'- gUGCGCGCc----GGGC-GCGCGCgucgCCg -3'
miRNA:   3'- -ACGCGUGaaguaCCUGaUGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 38537 0.74 0.559692
Target:  5'- cGUGCACggCG-GGA--ACGCGCUCCg -3'
miRNA:   3'- aCGCGUGaaGUaCCUgaUGCGCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.