miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 133372 0.66 0.933968
Target:  5'- cGcCGCGCUcgUCGcgcucGGGCUccugcucgGCGCGCUCUu -3'
miRNA:   3'- aC-GCGUGA--AGUa----CCUGA--------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 133372 0.66 0.933968
Target:  5'- cGcCGCGCUcgUCGcgcucGGGCUccugcucgGCGCGCUCUu -3'
miRNA:   3'- aC-GCGUGA--AGUa----CCUGA--------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 133103 0.69 0.846754
Target:  5'- cGCGCACcgCcuagcGGGCcgcuccgccgGCGCGCUCCc -3'
miRNA:   3'- aCGCGUGaaGua---CCUGa---------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 132205 0.68 0.870395
Target:  5'- aGCGCGC-UCGcGGAC-ACGCucgcCUCCa -3'
miRNA:   3'- aCGCGUGaAGUaCCUGaUGCGc---GAGG- -5'
25562 5' -53.8 NC_005337.1 + 132095 0.67 0.928724
Target:  5'- aGCGCG--UCGUGGACacgcugguCGCGCUg- -3'
miRNA:   3'- aCGCGUgaAGUACCUGau------GCGCGAgg -5'
25562 5' -53.8 NC_005337.1 + 132061 0.66 0.9482
Target:  5'- cGCGCGCUcgCGgcccGGGCcGCGCccGCgUCCg -3'
miRNA:   3'- aCGCGUGAa-GUa---CCUGaUGCG--CG-AGG- -5'
25562 5' -53.8 NC_005337.1 + 131614 0.66 0.935995
Target:  5'- cGCGCACUcagCGUGGAg-GCGgccggcgccaccuucCGCUUCg -3'
miRNA:   3'- aCGCGUGAa--GUACCUgaUGC---------------GCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 131252 0.66 0.9482
Target:  5'- cGCGCACaUCGgcgcGC-ACGCGCUgCCg -3'
miRNA:   3'- aCGCGUGaAGUacc-UGaUGCGCGA-GG- -5'
25562 5' -53.8 NC_005337.1 + 131081 0.8 0.273886
Target:  5'- aGCGCGagUUCGUGGuCUGCGCGCUggCCa -3'
miRNA:   3'- aCGCGUg-AAGUACCuGAUGCGCGA--GG- -5'
25562 5' -53.8 NC_005337.1 + 130162 0.71 0.725999
Target:  5'- cGCGCGCUUUcgGaGGCcgUGCGCGCg-- -3'
miRNA:   3'- aCGCGUGAAGuaC-CUG--AUGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 129200 0.71 0.755923
Target:  5'- gGUGC-CUUCGUGGACgccccagaGCGCUgCu -3'
miRNA:   3'- aCGCGuGAAGUACCUGaug-----CGCGAgG- -5'
25562 5' -53.8 NC_005337.1 + 129165 0.68 0.885044
Target:  5'- cGCGCACUgacgUCAU---CUACGCGCUg- -3'
miRNA:   3'- aCGCGUGA----AGUAccuGAUGCGCGAgg -5'
25562 5' -53.8 NC_005337.1 + 128791 0.73 0.611711
Target:  5'- gUGCGCGCgaUCAUGGGCgggugcgGCuGCGC-CCu -3'
miRNA:   3'- -ACGCGUGa-AGUACCUGa------UG-CGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 127462 0.74 0.559692
Target:  5'- aUGCGCACgcUCGUGGACaGCG-GCUgCg -3'
miRNA:   3'- -ACGCGUGa-AGUACCUGaUGCgCGAgG- -5'
25562 5' -53.8 NC_005337.1 + 127392 0.74 0.580391
Target:  5'- cGCGCGCgaCAUGGACggGCGCacGCUgCu -3'
miRNA:   3'- aCGCGUGaaGUACCUGa-UGCG--CGAgG- -5'
25562 5' -53.8 NC_005337.1 + 126882 0.66 0.93896
Target:  5'- cUGCGUGC-UCGUGGcgaggaacgccaACUGCGCGgaCa -3'
miRNA:   3'- -ACGCGUGaAGUACC------------UGAUGCGCgaGg -5'
25562 5' -53.8 NC_005337.1 + 125802 0.67 0.928724
Target:  5'- uUGCGacucCUUCAagaccagGGcCUGCGUGUUCCg -3'
miRNA:   3'- -ACGCgu--GAAGUa------CCuGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 125729 0.66 0.93896
Target:  5'- cUGCGCACgcUCGUaGaGGCggaGCGCGCgugaCCg -3'
miRNA:   3'- -ACGCGUGa-AGUA-C-CUGa--UGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 124794 0.67 0.928724
Target:  5'- cUGCGCGCag-AUGGGCcggcgguggACGCGCcgguUCCa -3'
miRNA:   3'- -ACGCGUGaagUACCUGa--------UGCGCG----AGG- -5'
25562 5' -53.8 NC_005337.1 + 124542 0.68 0.885044
Target:  5'- cGCGCuGCUUCA-GGcucuccuccccGCUGCGCGaggCCg -3'
miRNA:   3'- aCGCG-UGAAGUaCC-----------UGAUGCGCga-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.