Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25573 | 3' | -56.8 | NC_005337.1 | + | 66051 | 0.66 | 0.875663 |
Target: 5'- -gGAGCCCCagggGAGCgaCCGcaucgcGGACGCg -3' miRNA: 3'- ugUUCGGGGa---CUUGa-GGCa-----CCUGCGg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 52771 | 0.66 | 0.853059 |
Target: 5'- aAUggGCUCCcGcGACgcgUCGUGGuACGCCg -3' miRNA: 3'- -UGuuCGGGGaC-UUGa--GGCACC-UGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 107187 | 0.66 | 0.853059 |
Target: 5'- ---uGCCgCUGGACUUCGUGGucaccuucaACgGCCa -3' miRNA: 3'- uguuCGGgGACUUGAGGCACC---------UG-CGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 127570 | 0.66 | 0.875663 |
Target: 5'- gGCu-GCUgCUGGaggcggGCgcagCCGUGGACGUCg -3' miRNA: 3'- -UGuuCGGgGACU------UGa---GGCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 41168 | 0.66 | 0.842694 |
Target: 5'- cGCAGuccuCCCCgaucuccacgucgaUGAGCUCCGUGGagaggucgGCGCUu -3' miRNA: 3'- -UGUUc---GGGG--------------ACUUGAGGCACC--------UGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 14904 | 0.66 | 0.845115 |
Target: 5'- gGCGcGGCgCCgauggugGAagcaGCUCuCGUGGugGCCg -3' miRNA: 3'- -UGU-UCGgGGa------CU----UGAG-GCACCugCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 77661 | 0.66 | 0.845115 |
Target: 5'- cGCgAGGUCUCgcagacGAugUCCGUGGacugcgagcGCGCCa -3' miRNA: 3'- -UG-UUCGGGGa-----CUugAGGCACC---------UGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 129403 | 0.66 | 0.836154 |
Target: 5'- -gGAGCCgCUcaUGGACaugcucaUCCGgcUGGGCGCCa -3' miRNA: 3'- ugUUCGG-GG--ACUUG-------AGGC--ACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 30535 | 0.66 | 0.836978 |
Target: 5'- gGCAgccacGGCCUCUucguagacGGACUcggggagcuccCCGUGGAgGCCg -3' miRNA: 3'- -UGU-----UCGGGGA--------CUUGA-----------GGCACCUgCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 92551 | 0.66 | 0.875663 |
Target: 5'- cGCGAGCUcgccuCCUGGuuCUUCGaGGACgGCCg -3' miRNA: 3'- -UGUUCGG-----GGACUu-GAGGCaCCUG-CGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 126787 | 0.66 | 0.853059 |
Target: 5'- gGC-AGCCCCgUGGACcuggacgUCGUGcGCGCCc -3' miRNA: 3'- -UGuUCGGGG-ACUUGa------GGCACcUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 6705 | 0.66 | 0.845115 |
Target: 5'- cCAGGCCCUUcucgagcagGAACgagaCCacgGGGCGCCg -3' miRNA: 3'- uGUUCGGGGA---------CUUGa---GGca-CCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 50852 | 0.66 | 0.868339 |
Target: 5'- --cGGCaCCgaGAuGCU-CGUGGGCGCCa -3' miRNA: 3'- uguUCG-GGgaCU-UGAgGCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 41174 | 0.66 | 0.853059 |
Target: 5'- gGCAGGUCCUUGAug-CCGcGGAggaGCCc -3' miRNA: 3'- -UGUUCGGGGACUugaGGCaCCUg--CGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 14102 | 0.66 | 0.853059 |
Target: 5'- uACAGGCUCUUG-ACUaugCGggcGGugGCCa -3' miRNA: 3'- -UGUUCGGGGACuUGAg--GCa--CCugCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 71160 | 0.66 | 0.868339 |
Target: 5'- cCGAGCCCU---GCaUCGUGGgGCGCCc -3' miRNA: 3'- uGUUCGGGGacuUGaGGCACC-UGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 35587 | 0.66 | 0.845115 |
Target: 5'- aGCGAGgcggauCCCCgccgGAGCaCCGUGGcucCGCCc -3' miRNA: 3'- -UGUUC------GGGGa---CUUGaGGCACCu--GCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 25010 | 0.66 | 0.875663 |
Target: 5'- cGCucGUacgaCUUGAugUUCGUGaGGCGCCg -3' miRNA: 3'- -UGuuCGg---GGACUugAGGCAC-CUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 13935 | 0.66 | 0.860802 |
Target: 5'- gGCGcAGCCCCgucguGCUCCaUGGGCGa- -3' miRNA: 3'- -UGU-UCGGGGacu--UGAGGcACCUGCgg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 52211 | 0.66 | 0.860802 |
Target: 5'- uACAucacGCCCCgGGACguggCCGcgcucGACGCCa -3' miRNA: 3'- -UGUu---CGGGGaCUUGa---GGCac---CUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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