miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 66051 0.66 0.875663
Target:  5'- -gGAGCCCCagggGAGCgaCCGcaucgcGGACGCg -3'
miRNA:   3'- ugUUCGGGGa---CUUGa-GGCa-----CCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 52771 0.66 0.853059
Target:  5'- aAUggGCUCCcGcGACgcgUCGUGGuACGCCg -3'
miRNA:   3'- -UGuuCGGGGaC-UUGa--GGCACC-UGCGG- -5'
25573 3' -56.8 NC_005337.1 + 107187 0.66 0.853059
Target:  5'- ---uGCCgCUGGACUUCGUGGucaccuucaACgGCCa -3'
miRNA:   3'- uguuCGGgGACUUGAGGCACC---------UG-CGG- -5'
25573 3' -56.8 NC_005337.1 + 127570 0.66 0.875663
Target:  5'- gGCu-GCUgCUGGaggcggGCgcagCCGUGGACGUCg -3'
miRNA:   3'- -UGuuCGGgGACU------UGa---GGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 41168 0.66 0.842694
Target:  5'- cGCAGuccuCCCCgaucuccacgucgaUGAGCUCCGUGGagaggucgGCGCUu -3'
miRNA:   3'- -UGUUc---GGGG--------------ACUUGAGGCACC--------UGCGG- -5'
25573 3' -56.8 NC_005337.1 + 14904 0.66 0.845115
Target:  5'- gGCGcGGCgCCgauggugGAagcaGCUCuCGUGGugGCCg -3'
miRNA:   3'- -UGU-UCGgGGa------CU----UGAG-GCACCugCGG- -5'
25573 3' -56.8 NC_005337.1 + 77661 0.66 0.845115
Target:  5'- cGCgAGGUCUCgcagacGAugUCCGUGGacugcgagcGCGCCa -3'
miRNA:   3'- -UG-UUCGGGGa-----CUugAGGCACC---------UGCGG- -5'
25573 3' -56.8 NC_005337.1 + 129403 0.66 0.836154
Target:  5'- -gGAGCCgCUcaUGGACaugcucaUCCGgcUGGGCGCCa -3'
miRNA:   3'- ugUUCGG-GG--ACUUG-------AGGC--ACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 30535 0.66 0.836978
Target:  5'- gGCAgccacGGCCUCUucguagacGGACUcggggagcuccCCGUGGAgGCCg -3'
miRNA:   3'- -UGU-----UCGGGGA--------CUUGA-----------GGCACCUgCGG- -5'
25573 3' -56.8 NC_005337.1 + 92551 0.66 0.875663
Target:  5'- cGCGAGCUcgccuCCUGGuuCUUCGaGGACgGCCg -3'
miRNA:   3'- -UGUUCGG-----GGACUu-GAGGCaCCUG-CGG- -5'
25573 3' -56.8 NC_005337.1 + 126787 0.66 0.853059
Target:  5'- gGC-AGCCCCgUGGACcuggacgUCGUGcGCGCCc -3'
miRNA:   3'- -UGuUCGGGG-ACUUGa------GGCACcUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 6705 0.66 0.845115
Target:  5'- cCAGGCCCUUcucgagcagGAACgagaCCacgGGGCGCCg -3'
miRNA:   3'- uGUUCGGGGA---------CUUGa---GGca-CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 50852 0.66 0.868339
Target:  5'- --cGGCaCCgaGAuGCU-CGUGGGCGCCa -3'
miRNA:   3'- uguUCG-GGgaCU-UGAgGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 41174 0.66 0.853059
Target:  5'- gGCAGGUCCUUGAug-CCGcGGAggaGCCc -3'
miRNA:   3'- -UGUUCGGGGACUugaGGCaCCUg--CGG- -5'
25573 3' -56.8 NC_005337.1 + 14102 0.66 0.853059
Target:  5'- uACAGGCUCUUG-ACUaugCGggcGGugGCCa -3'
miRNA:   3'- -UGUUCGGGGACuUGAg--GCa--CCugCGG- -5'
25573 3' -56.8 NC_005337.1 + 71160 0.66 0.868339
Target:  5'- cCGAGCCCU---GCaUCGUGGgGCGCCc -3'
miRNA:   3'- uGUUCGGGGacuUGaGGCACC-UGCGG- -5'
25573 3' -56.8 NC_005337.1 + 35587 0.66 0.845115
Target:  5'- aGCGAGgcggauCCCCgccgGAGCaCCGUGGcucCGCCc -3'
miRNA:   3'- -UGUUC------GGGGa---CUUGaGGCACCu--GCGG- -5'
25573 3' -56.8 NC_005337.1 + 25010 0.66 0.875663
Target:  5'- cGCucGUacgaCUUGAugUUCGUGaGGCGCCg -3'
miRNA:   3'- -UGuuCGg---GGACUugAGGCAC-CUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 13935 0.66 0.860802
Target:  5'- gGCGcAGCCCCgucguGCUCCaUGGGCGa- -3'
miRNA:   3'- -UGU-UCGGGGacu--UGAGGcACCUGCgg -5'
25573 3' -56.8 NC_005337.1 + 52211 0.66 0.860802
Target:  5'- uACAucacGCCCCgGGACguggCCGcgcucGACGCCa -3'
miRNA:   3'- -UGUu---CGGGGaCUUGa---GGCac---CUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.