miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 97576 1.12 0.001378
Target:  5'- cACAAGCCCCUGAACUCCGUGGACGCCg -3'
miRNA:   3'- -UGUUCGGGGACUUGAGGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 46783 0.8 0.201351
Target:  5'- gACGAGCCgCUGAAcCUCuCGgucugGGACGCCg -3'
miRNA:   3'- -UGUUCGGgGACUU-GAG-GCa----CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 52369 0.78 0.250875
Target:  5'- -gGGGCCgCUGAcggcuGCggggCCGUGGACGCCu -3'
miRNA:   3'- ugUUCGGgGACU-----UGa---GGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 10777 0.77 0.272051
Target:  5'- aGCAGGCggggucguCCCUGGauacgauagcgaaccGCUgCGUGGACGCCg -3'
miRNA:   3'- -UGUUCG--------GGGACU---------------UGAgGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 121843 0.76 0.347217
Target:  5'- gACGuGCUCgUGAAgUCgGUGGGCGCCa -3'
miRNA:   3'- -UGUuCGGGgACUUgAGgCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 101012 0.75 0.387501
Target:  5'- cGCGGGCCUCUGGauggcguggACUCgCGUGGGC-CCg -3'
miRNA:   3'- -UGUUCGGGGACU---------UGAG-GCACCUGcGG- -5'
25573 3' -56.8 NC_005337.1 + 68179 0.74 0.439721
Target:  5'- cCGAGUacgCCCUGAGCgcggccCCGgGGGCGCCg -3'
miRNA:   3'- uGUUCG---GGGACUUGa-----GGCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 52121 0.73 0.486158
Target:  5'- gACGGGCCggCCaUGGcCUUCGUGGACGCg -3'
miRNA:   3'- -UGUUCGG--GG-ACUuGAGGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 108867 0.73 0.495726
Target:  5'- uGCGAGCggaaCCC-GAACUCCGaGGcCGCCa -3'
miRNA:   3'- -UGUUCG----GGGaCUUGAGGCaCCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 42496 0.73 0.448809
Target:  5'- cGCGAGCUCCUGAAg-CUGcGGACGUCc -3'
miRNA:   3'- -UGUUCGGGGACUUgaGGCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 123576 0.73 0.458001
Target:  5'- gACGAGCCC--GAGCUCC-UGGcCGCCu -3'
miRNA:   3'- -UGUUCGGGgaCUUGAGGcACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 49319 0.72 0.554738
Target:  5'- gGCGAGCCCCUGcagaUCCG-GGAC-CUg -3'
miRNA:   3'- -UGUUCGGGGACuug-AGGCaCCUGcGG- -5'
25573 3' -56.8 NC_005337.1 + 68443 0.72 0.505378
Target:  5'- uACAGGCCCUcGAGCUCCa---GCGCCg -3'
miRNA:   3'- -UGUUCGGGGaCUUGAGGcaccUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 115400 0.72 0.51511
Target:  5'- gACAcGCUCC---GCUCCGaGGACGCCg -3'
miRNA:   3'- -UGUuCGGGGacuUGAGGCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 88085 0.72 0.505378
Target:  5'- uGCAGG-CCgUGGACaUgGUGGACGCCg -3'
miRNA:   3'- -UGUUCgGGgACUUGaGgCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 37801 0.72 0.505378
Target:  5'- cCAGGCCCCgccgGAAa--CGUGG-CGCCa -3'
miRNA:   3'- uGUUCGGGGa---CUUgagGCACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 88306 0.72 0.524918
Target:  5'- uCAAGCUCggGGACgucagCGUGGACGCCa -3'
miRNA:   3'- uGUUCGGGgaCUUGag---GCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 130738 0.72 0.554738
Target:  5'- cGCucguGGCCgCUGGguccgacguguGCaCCGUGGACGCCc -3'
miRNA:   3'- -UGu---UCGGgGACU-----------UGaGGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 78167 0.72 0.552733
Target:  5'- cGCAGGUCCCUGAACgucacgccgaagCCGUaGAUgGCCa -3'
miRNA:   3'- -UGUUCGGGGACUUGa-----------GGCAcCUG-CGG- -5'
25573 3' -56.8 NC_005337.1 + 69752 0.72 0.544737
Target:  5'- gACGAGCUCCaGGACggCCGUGGccauguacGCGCUc -3'
miRNA:   3'- -UGUUCGGGGaCUUGa-GGCACC--------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.