miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 131534 0.68 0.756314
Target:  5'- gAUAGGCCCgUGcccGCUaCCGgcGGACGUCg -3'
miRNA:   3'- -UGUUCGGGgACu--UGA-GGCa-CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 131421 0.7 0.646354
Target:  5'- gGCGcgcGGCUCCgcGGACUCCGUcuccgcGGAgGCCg -3'
miRNA:   3'- -UGU---UCGGGGa-CUUGAGGCA------CCUgCGG- -5'
25573 3' -56.8 NC_005337.1 + 131366 0.69 0.717223
Target:  5'- gGCGAcgccGCUCCUGGACguggUCUGcagccGGACGCCg -3'
miRNA:   3'- -UGUU----CGGGGACUUG----AGGCa----CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 130944 0.69 0.717223
Target:  5'- --cAGCCguuCCUGGACgccggcguggCCGUGGACGUg -3'
miRNA:   3'- uguUCGG---GGACUUGa---------GGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 130753 0.68 0.765836
Target:  5'- uACGuGGCCUCgcaggUGGACUUCGcgcagaccUGGGCGCCg -3'
miRNA:   3'- -UGU-UCGGGG-----ACUUGAGGC--------ACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 130738 0.72 0.554738
Target:  5'- cGCucguGGCCgCUGGguccgacguguGCaCCGUGGACGCCc -3'
miRNA:   3'- -UGu---UCGGgGACU-----------UGaGGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 130708 0.7 0.636117
Target:  5'- gACGGGCCC--GGACUCCGUGu-CGCUc -3'
miRNA:   3'- -UGUUCGGGgaCUUGAGGCACcuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 129603 0.69 0.727129
Target:  5'- cGCGAGCgaCCgugGAGCUCguccggcggcuCGUGGcCGCCg -3'
miRNA:   3'- -UGUUCGg-GGa--CUUGAG-----------GCACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 129403 0.66 0.836154
Target:  5'- -gGAGCCgCUcaUGGACaugcucaUCCGgcUGGGCGCCa -3'
miRNA:   3'- ugUUCGG-GG--ACUUG-------AGGC--ACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 129194 0.68 0.775238
Target:  5'- -gAGGCCggUGc-CUUCGUGGACGCCc -3'
miRNA:   3'- ugUUCGGggACuuGAGGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 128732 0.68 0.769611
Target:  5'- cGCGAGCCgCUcuggagcgcgugacaGAGCUCCGccGGCGCg -3'
miRNA:   3'- -UGUUCGGgGA---------------CUUGAGGCacCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 128245 0.67 0.811478
Target:  5'- cCAcGCCCgCgacAACUCUGggcGGACGCCg -3'
miRNA:   3'- uGUuCGGG-Gac-UUGAGGCa--CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 127570 0.66 0.875663
Target:  5'- gGCu-GCUgCUGGaggcggGCgcagCCGUGGACGUCg -3'
miRNA:   3'- -UGuuCGGgGACU------UGa---GGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 126787 0.66 0.853059
Target:  5'- gGC-AGCCCCgUGGACcuggacgUCGUGcGCGCCc -3'
miRNA:   3'- -UGuUCGGGG-ACUUGa------GGCACcUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 124915 0.68 0.769611
Target:  5'- aGCAugccccuGCCCCUGGACcCCGacagcagucccuccGGACGCa -3'
miRNA:   3'- -UGUu------CGGGGACUUGaGGCa-------------CCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 123887 0.66 0.875663
Target:  5'- cAC-AGCCCgaGcaccAGCUgCGUGGcCGCCu -3'
miRNA:   3'- -UGuUCGGGgaC----UUGAgGCACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 123665 0.67 0.823574
Target:  5'- cGCGGGCCUguaccaccuccgcaUGGugUCCacGGACGCCg -3'
miRNA:   3'- -UGUUCGGGg-------------ACUugAGGcaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 123576 0.73 0.458001
Target:  5'- gACGAGCCC--GAGCUCC-UGGcCGCCu -3'
miRNA:   3'- -UGUUCGGGgaCUUGAGGcACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 123538 0.69 0.726142
Target:  5'- uCGAGUgcacgucccaccgCCCUGAccACauggCCGUGGACGCg -3'
miRNA:   3'- uGUUCG-------------GGGACU--UGa---GGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 121843 0.76 0.347217
Target:  5'- gACGuGCUCgUGAAgUCgGUGGGCGCCa -3'
miRNA:   3'- -UGUuCGGGgACUUgAGgCACCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.