Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25573 | 3' | -56.8 | NC_005337.1 | + | 97576 | 1.12 | 0.001378 |
Target: 5'- cACAAGCCCCUGAACUCCGUGGACGCCg -3' miRNA: 3'- -UGUUCGGGGACUUGAGGCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 114665 | 0.7 | 0.611549 |
Target: 5'- cGCGGGCCUCgaggccgccuCUCCGcUGGACGCa -3' miRNA: 3'- -UGUUCGGGGacuu------GAGGC-ACCUGCGg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 115038 | 0.7 | 0.61564 |
Target: 5'- cCAAGCUCaucaGACUCgcggaCGUGGACGCCg -3' miRNA: 3'- uGUUCGGGgac-UUGAG-----GCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 92551 | 0.66 | 0.875663 |
Target: 5'- cGCGAGCUcgccuCCUGGuuCUUCGaGGACgGCCg -3' miRNA: 3'- -UGUUCGG-----GGACUu-GAGGCaCCUG-CGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 42496 | 0.73 | 0.448809 |
Target: 5'- cGCGAGCUCCUGAAg-CUGcGGACGUCc -3' miRNA: 3'- -UGUUCGGGGACUUgaGGCaCCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 123576 | 0.73 | 0.458001 |
Target: 5'- gACGAGCCC--GAGCUCC-UGGcCGCCu -3' miRNA: 3'- -UGUUCGGGgaCUUGAGGcACCuGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 37801 | 0.72 | 0.505378 |
Target: 5'- cCAGGCCCCgccgGAAa--CGUGG-CGCCa -3' miRNA: 3'- uGUUCGGGGa---CUUgagGCACCuGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 88085 | 0.72 | 0.505378 |
Target: 5'- uGCAGG-CCgUGGACaUgGUGGACGCCg -3' miRNA: 3'- -UGUUCgGGgACUUGaGgCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 78167 | 0.72 | 0.552733 |
Target: 5'- cGCAGGUCCCUGAACgucacgccgaagCCGUaGAUgGCCa -3' miRNA: 3'- -UGUUCGGGGACUUGa-----------GGCAcCUG-CGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 53261 | 0.71 | 0.585037 |
Target: 5'- --cGGCCCgUGGA---CGUGGACGCCa -3' miRNA: 3'- uguUCGGGgACUUgagGCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 49319 | 0.72 | 0.554738 |
Target: 5'- gGCGAGCCCCUGcagaUCCG-GGAC-CUg -3' miRNA: 3'- -UGUUCGGGGACuug-AGGCaCCUGcGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 69752 | 0.72 | 0.544737 |
Target: 5'- gACGAGCUCCaGGACggCCGUGGccauguacGCGCUc -3' miRNA: 3'- -UGUUCGGGGaCUUGa-GGCACC--------UGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 46783 | 0.8 | 0.201351 |
Target: 5'- gACGAGCCgCUGAAcCUCuCGgucugGGACGCCg -3' miRNA: 3'- -UGUUCGGgGACUU-GAG-GCa----CCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 95648 | 0.71 | 0.564793 |
Target: 5'- cACGGGCUCCagGGGCUCCG-GGuuccccagcACGCCc -3' miRNA: 3'- -UGUUCGGGGa-CUUGAGGCaCC---------UGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 52369 | 0.78 | 0.250875 |
Target: 5'- -gGGGCCgCUGAcggcuGCggggCCGUGGACGCCu -3' miRNA: 3'- ugUUCGGgGACU-----UGa---GGCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 115400 | 0.72 | 0.51511 |
Target: 5'- gACAcGCUCC---GCUCCGaGGACGCCg -3' miRNA: 3'- -UGUuCGGGGacuUGAGGCaCCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 39559 | 0.71 | 0.585037 |
Target: 5'- gGCGGGCgCUCgGGuACUCguccuCGUGGACGCCg -3' miRNA: 3'- -UGUUCG-GGGaCU-UGAG-----GCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 111858 | 0.7 | 0.61564 |
Target: 5'- aGCAGGCCCCgGAugUCgGUGu-CGUCc -3' miRNA: 3'- -UGUUCGGGGaCUugAGgCACcuGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 101012 | 0.75 | 0.387501 |
Target: 5'- cGCGGGCCUCUGGauggcguggACUCgCGUGGGC-CCg -3' miRNA: 3'- -UGUUCGGGGACU---------UGAG-GCACCUGcGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 68443 | 0.72 | 0.505378 |
Target: 5'- uACAGGCCCUcGAGCUCCa---GCGCCg -3' miRNA: 3'- -UGUUCGGGGaCUUGAGGcaccUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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