miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 5' -61.4 NC_005337.1 + 42410 0.69 0.445069
Target:  5'- -cGGCC-UCGCUGuGCGCCggcuucggcgugagcUUCCGGGc -3'
miRNA:   3'- gaCCGGuAGCGGC-CGUGG---------------AAGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 45656 0.68 0.524412
Target:  5'- gCUGGUC-UCG-CGGUACagcUCCGGGAa -3'
miRNA:   3'- -GACCGGuAGCgGCCGUGga-AGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 56090 0.67 0.572956
Target:  5'- cCUGGCCAUCuaCGGCuucggcgugACgUUCaGGGAc -3'
miRNA:   3'- -GACCGGUAGcgGCCG---------UGgAAGgCCCU- -5'
25573 5' -61.4 NC_005337.1 + 56785 0.67 0.582806
Target:  5'- -cGGUCGcCGCCauGCACCgccCCGGGAc -3'
miRNA:   3'- gaCCGGUaGCGGc-CGUGGaa-GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 56897 0.67 0.582806
Target:  5'- -cGGCUgguGUUG-CGGCACCgcgggaUCCGGGGc -3'
miRNA:   3'- gaCCGG---UAGCgGCCGUGGa-----AGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 57243 0.67 0.553379
Target:  5'- -aGGCCGUgCaCCGGCGCUggUUCGGGc -3'
miRNA:   3'- gaCCGGUA-GcGGCCGUGGa-AGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 64521 0.72 0.317489
Target:  5'- aUGGCCAcggccguccuggagcUCGUcaaggaCGGCACCUUCCuGGAc -3'
miRNA:   3'- gACCGGU---------------AGCG------GCCGUGGAAGGcCCU- -5'
25573 5' -61.4 NC_005337.1 + 72382 0.66 0.632431
Target:  5'- -cGGCCGUCG-CGGUcagcgaGCCc-CCGGGGu -3'
miRNA:   3'- gaCCGGUAGCgGCCG------UGGaaGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 74365 0.66 0.652328
Target:  5'- gCUGGgCAgcaCGCgGGU--CUUCCGGGAc -3'
miRNA:   3'- -GACCgGUa--GCGgCCGugGAAGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 74703 0.68 0.514882
Target:  5'- gCUGGCCgcGUgGCUGGCGaaguaCUggcCCGGGGg -3'
miRNA:   3'- -GACCGG--UAgCGGCCGUg----GAa--GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 75089 0.68 0.501661
Target:  5'- --aGCCGUCGCCGGUGCCccgacgcacggcCUGGGGg -3'
miRNA:   3'- gacCGGUAGCGGCCGUGGaa----------GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 81237 0.66 0.662258
Target:  5'- -aGGCCGUugCGCCGGCAgCUcCCGc-- -3'
miRNA:   3'- gaCCGGUA--GCGGCCGUgGAaGGCccu -5'
25573 5' -61.4 NC_005337.1 + 81692 0.67 0.553379
Target:  5'- uUGGCCGccagCGCCGccGCGCCguccCCGcGGAg -3'
miRNA:   3'- gACCGGUa---GCGGC--CGUGGaa--GGC-CCU- -5'
25573 5' -61.4 NC_005337.1 + 81741 0.67 0.59269
Target:  5'- uCUGGCUGUcgcCGCCGGCGCCguucUCCu--- -3'
miRNA:   3'- -GACCGGUA---GCGGCCGUGGa---AGGcccu -5'
25573 5' -61.4 NC_005337.1 + 82159 0.7 0.407149
Target:  5'- -aGGCCAUgGCCGGCccgucgcgcACCUgcacgcggccgCCGGGc -3'
miRNA:   3'- gaCCGGUAgCGGCCG---------UGGAa----------GGCCCu -5'
25573 5' -61.4 NC_005337.1 + 82596 0.66 0.622478
Target:  5'- aCUGGCC-UCGCCGuaGgCgUCCaGGGGc -3'
miRNA:   3'- -GACCGGuAGCGGCcgUgGaAGG-CCCU- -5'
25573 5' -61.4 NC_005337.1 + 84213 0.67 0.586756
Target:  5'- gUGGCCAucauguaccaccuguUCcaGCgCGGCAUCUUCCuGGAc -3'
miRNA:   3'- gACCGGU---------------AG--CG-GCCGUGGAAGGcCCU- -5'
25573 5' -61.4 NC_005337.1 + 84969 0.69 0.467475
Target:  5'- aUGGCCuccagguAUCGCCGGU-CCgcCCGGGc -3'
miRNA:   3'- gACCGG-------UAGCGGCCGuGGaaGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 86768 0.71 0.358835
Target:  5'- aUGGCCAUCuCCGGCGuCCgcaCGGGc -3'
miRNA:   3'- gACCGGUAGcGGCCGU-GGaagGCCCu -5'
25573 5' -61.4 NC_005337.1 + 87792 0.74 0.227958
Target:  5'- -aGGCCAagGCgCGGCugCUgcCCGGGAg -3'
miRNA:   3'- gaCCGGUagCG-GCCGugGAa-GGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.