miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 5' -61.4 NC_005337.1 + 1093 0.68 0.505424
Target:  5'- -gGGCUAcaGCCGGCgcagcGCCgccgCCGGGAg -3'
miRNA:   3'- gaCCGGUagCGGCCG-----UGGaa--GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 1093 0.68 0.505424
Target:  5'- -gGGCUAcaGCCGGCgcagcGCCgccgCCGGGAg -3'
miRNA:   3'- gaCCGGUagCGGCCG-----UGGaa--GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 3327 0.67 0.572956
Target:  5'- -cGGCCA-CGCCGGCG---UCCaGGAa -3'
miRNA:   3'- gaCCGGUaGCGGCCGUggaAGGcCCU- -5'
25573 5' -61.4 NC_005337.1 + 10777 0.66 0.612532
Target:  5'- -cGGCCAUCGUCaGGCggacgACCgUCCcGGAc -3'
miRNA:   3'- gaCCGGUAGCGG-CCG-----UGGaAGGcCCU- -5'
25573 5' -61.4 NC_005337.1 + 11279 0.66 0.632431
Target:  5'- -cGGCCcUCGCCcaCGCCcaugUUCCGGGu -3'
miRNA:   3'- gaCCGGuAGCGGccGUGG----AAGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 15248 0.66 0.652328
Target:  5'- cCUGGCgG-CGCCGGCGCCgaacgUUgUGGcGAc -3'
miRNA:   3'- -GACCGgUaGCGGCCGUGG-----AAgGCC-CU- -5'
25573 5' -61.4 NC_005337.1 + 15779 0.66 0.632431
Target:  5'- -cGGUCAccCGCaCGGuCACCg-CCGGGAa -3'
miRNA:   3'- gaCCGGUa-GCG-GCC-GUGGaaGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 16945 0.67 0.582806
Target:  5'- uUGGCCGUCGCC---ACCgugaCGGGAu -3'
miRNA:   3'- gACCGGUAGCGGccgUGGaag-GCCCU- -5'
25573 5' -61.4 NC_005337.1 + 19691 0.67 0.57099
Target:  5'- -cGGCCGcguggcguacagCGCCGGCGCCaUCUGcGGc -3'
miRNA:   3'- gaCCGGUa-----------GCGGCCGUGGaAGGC-CCu -5'
25573 5' -61.4 NC_005337.1 + 23065 0.67 0.59269
Target:  5'- aUGGCgcUCGUgGGCGgCUcggggUCCGGGAa -3'
miRNA:   3'- gACCGguAGCGgCCGUgGA-----AGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 23138 0.66 0.642384
Target:  5'- -cGGCCAUgCGCCccuuCC-UCCGGGAg -3'
miRNA:   3'- gaCCGGUA-GCGGccguGGaAGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 29377 0.68 0.524412
Target:  5'- -cGGCCGUCG-CGGCGCUgg-UGGGGu -3'
miRNA:   3'- gaCCGGUAGCgGCCGUGGaagGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 29938 0.66 0.622478
Target:  5'- --uGCCAcaaggUUGUCGGCACCga-CGGGAc -3'
miRNA:   3'- gacCGGU-----AGCGGCCGUGGaagGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 30654 0.71 0.382485
Target:  5'- -aGGCUgccgCGUCGcGgGCCUUCCGGGGg -3'
miRNA:   3'- gaCCGGua--GCGGC-CgUGGAAGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 35748 0.66 0.662258
Target:  5'- -cGGCCGUCggGCgGGCuccccccgGCCUUgCCGcGGAa -3'
miRNA:   3'- gaCCGGUAG--CGgCCG--------UGGAA-GGC-CCU- -5'
25573 5' -61.4 NC_005337.1 + 38909 0.68 0.49604
Target:  5'- -cGGCCGUCGCUGuuGCCUU-CGGcGAc -3'
miRNA:   3'- gaCCGGUAGCGGCcgUGGAAgGCC-CU- -5'
25573 5' -61.4 NC_005337.1 + 39537 0.67 0.59269
Target:  5'- -cGGUCGUggcUGCCGGCGCC--CCGGcGGg -3'
miRNA:   3'- gaCCGGUA---GCGGCCGUGGaaGGCC-CU- -5'
25573 5' -61.4 NC_005337.1 + 40041 0.68 0.524412
Target:  5'- -gGGCguCGUCGCgGuGCGCCgaaCCGGGGa -3'
miRNA:   3'- gaCCG--GUAGCGgC-CGUGGaa-GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 40120 0.66 0.652328
Target:  5'- -cGGuucuCCGUCGUggggaGGCGCCgccCCGGGAa -3'
miRNA:   3'- gaCC----GGUAGCGg----CCGUGGaa-GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 42137 0.68 0.543665
Target:  5'- gCUGGCC--CG-CGGCGCg-UCCGGGGu -3'
miRNA:   3'- -GACCGGuaGCgGCCGUGgaAGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.